Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32080 426 / 1e-151 PUR ALPHA-1, PURALPHA-1 purin-rich alpha 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001781 [exp] 482 / 1e-173 AT2G32080 374 / 3e-131 purin-rich alpha 1 (.1.2) Lus10009182 [exp] 469 / 2e-168 AT2G32080 442 / 9e-158 purin-rich alpha 1 (.1.2) Lus10020245 [exp] 411 / 1e-146 AT2G32080 327 / 6e-114 purin-rich alpha 1 (.1.2) Lus10015921 [exp] 301 / 3e-102 AT2G32080 363 / 5e-127 purin-rich alpha 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G224000 [exp] 477 / 2e-171 AT2G32080 458 / 2e-164 purin-rich alpha 1 (.1.2) Potri.001G000700 [exp] 466 / 4e-167 AT2G32080 447 / 5e-160 purin-rich alpha 1 (.1.2) Potri.013G061100 [exp] 177 / 8e-54 AT2G32080 162 / 9e-48 purin-rich alpha 1 (.1.2) Potri.019G032001 [exp] 50 / 1e-07 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0609 [flax] [poplar] sPC4_like PF04845 [flax] [poplar] PurA PurA ssDNA and RNA-binding protein
Representative CDS sequence Show only first row Show all	>Lus10001782 pacid=23174791 polypeptide=Lus10001782 locus=Lus10001782.g ID=Lus10001782.BGIv1.0 annot-version=v1.0 ATGGAGGGGAATGCGGGTGGTAGCGGAGGGGCGGTAACAGTTTCGACAGCAGCTGTTCCGGCGGGGGGAGGCAATGCTGTAGGTGGAGGAGGAGGGAAGG ATGTTGAGCTGATGTGCAAGACACTCCAAGTGGAGCACAAGCTGTTCTACTTTGATTTGAAGGATAACCTTCGAGGCCGGTACTTGAAGATCTCTGAGAA GACTTCGTCCACCAGGTCTACGATCATCGTCCCTTCCTCTGGGATTGCCTGGTTCTTGGACCTCTTCAATTACTTTGTTACTTCTGATGAGCAGGATTTG TTCAGCAAGGAGTTATCGTTGGACACCAAGGTGTTCTATTTTGACGTCGGGGATAACAGAAGAGGACGCTTCCTCAAGATCTCAGAGGCTTCTGTTAGCA GAAACCGCAGTACGATCATTGTTCCTGCTGGAAGTTCCAGGGATGAAGGTTGGGCTTCATTTAGAAACATTTTGGAAGAGATCAACGAAGCATCAAGGCT ATTCCTACCTCCAGGGAATCAGCAAAATTCTGAATCGTCGGAGCGCCTAGTTGGACTCTCTGACGATGTTGGCGCTGGCTTCATACCAGGTCACAGCAGC CAAACTGCCCCGACTCTGGAACTAAACCTGGATCGCTCGGTCGAGTTACCAACTCAGGACGAGATCGGTAACCTAGGGGCTTCAAAGGTTATTCGAGTCG ACCAAAAGAGGTTCTTCTTCGATCTCGGCAGTAACAATCGTGGCCATTTCTTGAGGATCTCTGAGGTTGCTGGTGCTGATAGATCCTCCATAATTCTTCC ACTTTCTGGACTGAAACAGTTCCATGAAATCGTCGGTCACTTCGTCGACATCACCAAAGACCGAGTTGAAGCGATTGGGAGCAGCGCAAACGTCCGAACT GTTGACCCCCCTCAAAGATGA
AA sequence Show only first row Show all	>Lus10001782 pacid=23174791 polypeptide=Lus10001782 locus=Lus10001782.g ID=Lus10001782.BGIv1.0 annot-version=v1.0 MEGNAGGSGGAVTVSTAAVPAGGGNAVGGGGGKDVELMCKTLQVEHKLFYFDLKDNLRGRYLKISEKTSSTRSTIIVPSSGIAWFLDLFNYFVTSDEQDL FSKELSLDTKVFYFDVGDNRRGRFLKISEASVSRNRSTIIVPAGSSRDEGWASFRNILEEINEASRLFLPPGNQQNSESSERLVGLSDDVGAGFIPGHSS QTAPTLELNLDRSVELPTQDEIGNLGASKVIRVDQKRFFFDLGSNNRGHFLRISEVAGADRSSIILPLSGLKQFHEIVGHFVDITKDRVEAIGSSANVRT VDPPQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001782 [exp]	0	1
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10026383 [exp]	1.0	0.9347
AT2G39805			Integral membrane Yip1 family ...		Lus10004695 [exp]	3.6	0.9142
AT4G32930			unknown protein		Lus10005503 [exp]	3.9	0.9126
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10034073 [exp]	4.2	0.9215
AT4G33740			unknown protein		Lus10020507 [exp]	5.3	0.9310
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10021502 [exp]	6.3	0.9235
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10023582 [exp]	6.5	0.9077
AT3G44010			Ribosomal protein S14p/S29e fa...		Lus10013779 [exp]	6.9	0.9034
AT1G24050			RNA-processing, Lsm domain (.1...		Lus10010705 [exp]	7.7	0.9086
AT3G49150			F-box/RNI-like superfamily pro...		Lus10025561 [exp]	8.1	0.9239

Compare expression of checked genes

Lus10001782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.