Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54510 666 / 0 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT3G04810 660 / 0 ATNEK2 NIMA-related kinase 2 (.1.2) AT5G28290 631 / 0 ATNEK3 NIMA-related kinase 3 (.1) AT3G63280 611 / 0 ATNEK4 NIMA-related kinase 4 (.1.2) AT3G44200 442 / 1e-144 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G20860 414 / 2e-140 ATNEK5 NIMA-related kinase 5 (.1) AT3G12200 309 / 1e-97 ATNEK7 NIMA-related kinase 7 (.1.2) AT1G53570 152 / 3e-39 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G50240 153 / 9e-39 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT1G69220 143 / 1e-35 SIK1 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020244 [exp] 1040 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10015928 [exp] 826 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10009186 [exp] 822 / 0 AT1G54510 695 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10042632 [exp] 574 / 0 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10001857 [exp] 425 / 4e-138 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10013338 [exp] 425 / 5e-138 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10040499 [exp] 407 / 7e-135 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 399 / 3e-128 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10031834 [exp] 366 / 2e-121 AT3G20860 563 / 0.0 NIMA-related kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G039000 [exp] 756 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.005G051600 [exp] 751 / 0 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.002G049400 [exp] 673 / 0 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.001G218100 [exp] 438 / 4e-143 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.016G051900 [exp] 427 / 1e-142 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.006G056300 [exp] 426 / 5e-142 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.009G020100 [exp] 434 / 2e-141 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.001G018700 [exp] 411 / 2e-137 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.003G205400 [exp] 407 / 6e-136 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.019G052500 [exp] 146 / 1e-36 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001783 pacid=23174800 polypeptide=Lus10001783 locus=Lus10001783.g ID=Lus10001783.BGIv1.0 annot-version=v1.0 ATGGATCAGTACGAAGTACTGGAACAGATTGGGAAGGGGTCATTCGGCTCTGCTGTTCTTGTGAGGCACAAGCATGAAAAGAAGATGTATGTGTTAAAGA AGATCCGTCTTGCCCGTCAAACTGATAGATCACGTCGATCAGCTCATCAAGAGATGGAGCTGATTTCTAGAATAAGAAATCCTTTCATTGTAGAGTACAA AGATTCCTGGGTTGAAAAGGGTTGCTATGTCTGCATAATCATAGGTTATTGCGAAGGAGGAGACATGGCTGATGCTATAAGAAAAACCAATGGTGTGCTT TTCTCAGAAGAGAAGCTATGCAAGTGGGTTGTTCAACTTCTCATGGCGCTCGACTACTTGCACACGAAGCACATTCTTCATCGTGATGTCAAGTGTTCCA ACATTTTCTTAACGAAAGGTCAAGACATTCGTCTCGGTGACTTTGGACTAGCGAAAATTCTGACTTCCGACGACCTCGCGTCTTCTATTGTGGGAACTCC TAGTTACATGTGCCCCGAGCTTCTCGCCGACATACCTTACGGTTCGAAATCAGACATTTGGTCTTTAGGTTGCTGTATATATGAAATGGCTTCCCTTAAG CCTGCATTCAGAGCATTTGATATGCAAGCATTGATTAACAAAATCAACAGATCCATAGTATCTCCACTCCCAACCCAATACTCTAGTCCCTTTCGAAGTC TCATCAAAAGCATGCTGCGCAAGAACCCAGAACTCAGGCCGACGGCTGCGGAATTGCTAAGGCATCCACACCTTCAGCCTTACGTCCACAAGATACACGT CAAGATCAATAGCCCAAGAGGAGACAACACATTGCCGTACCAATGGCCAGACAACAACTACATGAAAACCAGATTCTTAGATACGGTAATGGCTACCGAA GATTCTTTCTGTAACGACAACAGGATGCTGAATCCAAGCATATCAGCAACGGATCAAGACTCGATCTGCTCCAGCAAGGCAATGCATCGGAGAAGAATGT CGGATGTCTCTCTTGAATCCAGCCGTGCAACTGTGATCCGTAAGTCTGTTGCCTCGAAAACTCGGAAAGCCGTTGCTTCATCCAGAGCCTCTACTGCCCC TAGAAAGCCGGATCCTGCAAAAAAACGCGAACCGATCAAGAAACCAGTTCTACCAAACCGGAGAGCGTCTCTACCAATTCCAAAGACGAAATCCACCAGA CAACAAAAACAACACCAACCTGATATCCTCCAGAGCATGAAGTCTCCAGACATCTCGGTCAACGCCCCACGAATCGACAGGATAGCCGAGTTCCCATTAC CTTCACCCGACGAGAAGACATTCTTTCATTTCCAAACAACTACTCCCCCACAAAACACCGTCCATCGTTCCACAACGATCACCAAGGACAAATGCACCAC GTCATCATGGCAAGGCATTCATTTCAGCATGTTGAAGCAAAAAGGTGAAGGCGACAACAACTCGTCGTCGTCCAACCAAAACGCGACAGCCGGAGGGGCA TCGAGCAGGACCACCACGTCGTCGGACGCGAGGCGTAGGAAGTTCGATACCTCGTCGTACAGGCAGCGAGCCGAGGCGTTGGAAGGGCTGCTGGAGTTTA GCGCCCGGCTGCTGCAGGAAGACAGGTACGATGAGTTGGGTGTGCTGCTGAAGCCGTTTGGTCCCGGGAAAGTTTCTCCCAGAGAAACTGCAATTTGGCT TGCCAAGAGCTTCAAAGAGAATACTACAACTACCAAAGTTGATGATTTTTAA
AA sequence Show only first row Show all	>Lus10001783 pacid=23174800 polypeptide=Lus10001783 locus=Lus10001783.g ID=Lus10001783.BGIv1.0 annot-version=v1.0 MDQYEVLEQIGKGSFGSAVLVRHKHEKKMYVLKKIRLARQTDRSRRSAHQEMELISRIRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMADAIRKTNGVL FSEEKLCKWVVQLLMALDYLHTKHILHRDVKCSNIFLTKGQDIRLGDFGLAKILTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMASLK PAFRAFDMQALINKINRSIVSPLPTQYSSPFRSLIKSMLRKNPELRPTAAELLRHPHLQPYVHKIHVKINSPRGDNTLPYQWPDNNYMKTRFLDTVMATE DSFCNDNRMLNPSISATDQDSICSSKAMHRRRMSDVSLESSRATVIRKSVASKTRKAVASSRASTAPRKPDPAKKREPIKKPVLPNRRASLPIPKTKSTR QQKQHQPDILQSMKSPDISVNAPRIDRIAEFPLPSPDEKTFFHFQTTTPPQNTVHRSTTITKDKCTTSSWQGIHFSMLKQKGEGDNNSSSSNQNATAGGA SSRTTTSSDARRRKFDTSSYRQRAEALEGLLEFSARLLQEDRYDELGVLLKPFGPGKVSPRETAIWLAKSFKENTTTTKVDDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10001783 [exp]	0	1
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10020244 [exp]	1.0	0.8575
AT1G12330			unknown protein		Lus10028918 [exp]	2.4	0.8231
AT5G17520		MEX1, RCP1	MALTOSE EXCESS 1, root cap 1 (...		Lus10020364 [exp]	4.6	0.7845
AT1G29700			Metallo-hydrolase/oxidoreducta...		Lus10021698 [exp]	12.8	0.8164
AT4G16650			O-fucosyltransferase family pr...		Lus10004729 [exp]	13.3	0.7809
AT1G07220			Arabidopsis thaliana protein o...		Lus10040665 [exp]	17.3	0.7973
AT2G40130			Double Clp-N motif-containing ...		Lus10040206 [exp]	18.1	0.8151
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10017886 [exp]	18.3	0.7691
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10016493 [exp]	20.2	0.7770
AT4G15930			Dynein light chain type 1 fami...		Lus10037494 [exp]	25.5	0.7748

Compare expression of checked genes

Lus10001783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.