Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61360 491 / 2e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02420 208 / 4e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71060 166 / 2e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77360 163 / 4e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 156 / 8e-41 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT3G49730 145 / 3e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22670 144 / 5e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 142 / 2e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 142 / 3e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 140 / 2e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042362 [exp] 214 / 7e-63 AT1G02420 613 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020243 [exp] 197 / 1e-61 AT3G61360 115 / 7e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026306 [exp] 189 / 2e-54 AT1G02420 522 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 177 / 4e-49 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001588 [exp] 162 / 4e-43 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041193 [exp] 149 / 7e-39 AT3G22670 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 140 / 1e-35 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 137 / 2e-34 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040633 [exp] 137 / 4e-34 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G130400 [exp] 596 / 0 AT3G61360 540 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G079400 [exp] 219 / 2e-64 AT1G02420 649 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 180 / 1e-50 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 167 / 1e-45 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G084000 [exp] 152 / 4e-40 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 147 / 2e-38 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 148 / 4e-38 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083800 [exp] 145 / 1e-37 AT3G22670 428 / 3e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G083900 [exp] 145 / 2e-37 AT3G22670 439 / 1e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G070200 [exp] 139 / 7e-36 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10001784 pacid=23174797 polypeptide=Lus10001784 locus=Lus10001784.g ID=Lus10001784.BGIv1.0 annot-version=v1.0 ATGTCGTCGTTGTTTGTGAACAAGGGTAGTAATCTGATTCATTGCAAAACCCTGTCAACGGTTCTTTTCACTACTGCTGCTGCTGCTTCGAAATCAAACC CAGAAGTTGAAAAGAACATTGCTAGAATCATAAACAACCATCATCCATTTCCAGAGAAGAGCTTACTCCCCATTCTGAAAACCGAAATCCCTGCAGCTTT AATCACCACCAGATTTGTGGAGAACGTCCTTGGCCATCTCTTTGCAGCTCATTGCAATGGGCTCAAGGCATTGGAGCTCTTTAGGTTCTGCCTGAAGCAT CCGGGTTTCGTCCCTAGCGAGGACGCTTTCGAGAAGACCCTCCATATCCTCGCTCGGATGCGGTACTTCGAGAAAGCCTGGGAATTGATGGAGGAAATTG CTGCATTGTCAGGGTCAGAGTCAGGGTCGAGGTTGATGATCACTACCAAGTCAATGAGCATTGTACTGTCGAAGGTGGCGAAGTTCGGATCGTATGAGGA GACGATCGAGGCGTTCGACAGGATGGAGAGGATGTGTAAAAGGAGGTTTGGTACTGAAGAGTTCAATGTGCTGATCAGGGCGTTTTGTACTCAGAGGGAG ATGAAAGAGGCGAGGTCGGTTTTCGTTAAGTACCACGATCGATTTGCTCCCGATTCCAAGACAATGAACATACTGCTGTTGGGGTTTAAGGAGTCCGGGG GCGATTACATTAGTGCAATGGAGCTTTTTTACCATGAGATGATGAAGAGAGGGTTTAAGCCTACCGGTTCGACTTACACAGTCCGGATCGATGCTTATTG CAAAAAGGGTCTCTTTGGTGATGCTCTGAGGATCTTTGGAGAAATGCAGAAGGCTGGCTGGTCGCCGACGTTGCAGACTTTCACTACATTGATCCACGGA GCCGGGATCGCTCGTAATGTGCTCAAAGCCAGAGAGCTCTTCGAGGAAATTCGTGTTCGGAACCTACAGCCTGATGCTGCAGCTTATAATGCACTGATCA GCACTTACATAAAGTGCAGAGAGCTGAAGCAAGCTGTTTCACTAATGAATGAGATGGAAGAGAAGCATGTCGGGGTAGATAATGTGACGTACCACACGTT GTTCGTAGGGTCGATGAACTCGAGCGGGATAGAAAGCGTCTGCGAGCTGTATGAAAAGATGGCGGCGAAGAGATTCGTTCCGGAAGCGAGGACTTCGGTC ATGCTGATGAAGTTCTTCTGCGCAAACGGTAGAATGGATTTCGGGGTGAGGCTATGGGATTACTTGATGAGTAATGGACATTGTCCTCATGGACATGCTT TGGATCTTTTGGTGACGGCGCTGTGTTCTAGGGGAAGGTTGCAAGAGGCCTTGGATTGCGCGGTGCAGTTCGTTGAGAGAGGGATGCGGCTGAGCGAATC TGTGTATAGGATGCTGAGGACGTTCTTGGAACAGTCTGATGATAAGAGCGATGAGTGGGAAGAACTCAACAGGATGATCAAGAAGCTGCATTTGGTTCTG CCGCGGTCAAAGGGCCATGCTCTCGGTAATCTTTCGCTATAG
AA sequence Show only first row Show all	>Lus10001784 pacid=23174797 polypeptide=Lus10001784 locus=Lus10001784.g ID=Lus10001784.BGIv1.0 annot-version=v1.0 MSSLFVNKGSNLIHCKTLSTVLFTTAAAASKSNPEVEKNIARIINNHHPFPEKSLLPILKTEIPAALITTRFVENVLGHLFAAHCNGLKALELFRFCLKH PGFVPSEDAFEKTLHILARMRYFEKAWELMEEIAALSGSESGSRLMITTKSMSIVLSKVAKFGSYEETIEAFDRMERMCKRRFGTEEFNVLIRAFCTQRE MKEARSVFVKYHDRFAPDSKTMNILLLGFKESGGDYISAMELFYHEMMKRGFKPTGSTYTVRIDAYCKKGLFGDALRIFGEMQKAGWSPTLQTFTTLIHG AGIARNVLKARELFEEIRVRNLQPDAAAYNALISTYIKCRELKQAVSLMNEMEEKHVGVDNVTYHTLFVGSMNSSGIESVCELYEKMAAKRFVPEARTSV MLMKFFCANGRMDFGVRLWDYLMSNGHCPHGHALDLLVTALCSRGRLQEALDCAVQFVERGMRLSESVYRMLRTFLEQSDDKSDEWEELNRMIKKLHLVL PRSKGHALGNLSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61360			Tetratricopeptide repeat (TPR)...		Lus10001784 [exp]	0	1
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10029481 [exp]	2.4	0.8775
AT5G59500			protein C-terminal S-isoprenyl...		Lus10001571 [exp]	4.9	0.8484
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Lus10039592 [exp]	5.7	0.8401
AT1G03100			Pentatricopeptide repeat (PPR)...		Lus10020775 [exp]	10.7	0.8236
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10019864 [exp]	12.0	0.8169
AT2G44530			Phosphoribosyltransferase fami...		Lus10012074 [exp]	13.4	0.8009
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10037260 [exp]	13.6	0.8248
AT1G43980			Tetratricopeptide repeat (TPR)...		Lus10028647 [exp]	15.9	0.8130
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10020996 [exp]	16.5	0.8226
AT5G07900			Mitochondrial transcription te...		Lus10040817 [exp]	20.4	0.8339

Compare expression of checked genes

Lus10001784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.