Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04830 462 / 1e-165 Protein prenylyltransferase superfamily protein (.1.2) AT5G28220 457 / 2e-163 Protein prenylyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020242 [exp] 436 / 7e-154 AT3G04830 361 / 3e-124 Protein prenylyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G038700 [exp] 506 / 0 AT3G04830 474 / 3e-170 Protein prenylyltransferase superfamily protein (.1.2) Potri.005G051300 [exp] 500 / 0 AT3G04830 505 / 0.0 Protein prenylyltransferase superfamily protein (.1.2) Potri.013G038501 [exp] 156 / 2e-48 AT3G04830 145 / 2e-44 Protein prenylyltransferase superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001785 pacid=23174794 polypeptide=Lus10001785 locus=Lus10001785.g ID=Lus10001785.BGIv1.0 annot-version=v1.0 ATGGTGACCAAAACGGAGGAGAGTCAATTGGAGAAGCTCGAGAGCCAGGTCGACAATGGTGGAGGAGGCGCGTGGGAGTATCTTTGCTTGGTCAGGAAGC TCAAGGTTAGGCGATCGGATAAGGTGTTGAAGTACGGGCTGTCCATTTTGAATGACTCCCGAAAGCGATCCAGCCTCGGCCCCGATGAGTGGACTCTGTA CGAACAAGTGGCGATTGCAGCTATGGATTGTCACGCTCTTGATGTTGCCAAGGATTCCATAACTGTATTGCAAAAGAAGTTCCCAGGGAGCAAAAGAGTT GGCAGATTGGAAGGAATGCTGCTCGAAGCGAAGGGTTCTTGGGAAGATGCCGAGCAAGCTTACACAAGCCTTCTGGAGGACAACCCGTTGGATCAGGTGA TACACAAGAGAAGGATTGCCGTTGCGAAGGCACAGGGCAACATTTCGGCAGCCATTGATCTGCTAAACAAATATCTGGAAATATTCATGGCAGATCATGA CGCCTGGAGAGAGCTTGCAGAGATATACGTCTCCCTACAGATGTATAAGCAAGCCGCTTTCTGCTACGAGGAGCTCATATTATCTCAACCTACAGTCCCA ATTCATCATCTTGCCTATGCTGATGTGCTCTATACACTTGGAGGACTTGAGAACATTCAGAACGCGAAGAAATACTACTTGTCCACCGTAGATCTGACTG GAGGCAAGAACAACAGAGCTCTCTTTGGCATCTGTCTGTGCACCTCCGCCATTTCTCAACTGTCGCGAGGAAGGAACAAGGACGACAAGGACAGCCTGGA TCTCCCGTCCCTCGCCACAGCAGCTCTGGAGAAGGAATACAAGCAGAATGCTTCTGATAAACTTTCCGTCCTCACATCAGCTCTGAAATGCCTGAGAGTC TCTTGA
AA sequence Show only first row Show all	>Lus10001785 pacid=23174794 polypeptide=Lus10001785 locus=Lus10001785.g ID=Lus10001785.BGIv1.0 annot-version=v1.0 MVTKTEESQLEKLESQVDNGGGGAWEYLCLVRKLKVRRSDKVLKYGLSILNDSRKRSSLGPDEWTLYEQVAIAAMDCHALDVAKDSITVLQKKFPGSKRV GRLEGMLLEAKGSWEDAEQAYTSLLEDNPLDQVIHKRRIAVAKAQGNISAAIDLLNKYLEIFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP IHHLAYADVLYTLGGLENIQNAKKYYLSTVDLTGGKNNRALFGICLCTSAISQLSRGRNKDDKDSLDLPSLATAALEKEYKQNASDKLSVLTSALKCLRV S

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04830			Protein prenylyltransferase su...		Lus10001785 [exp]	0	1
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10006317 [exp]	4.5	0.9360
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	4.6	0.9410
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10015867 [exp]	5.2	0.9201
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10037416 [exp]	6.3	0.9184
AT5G20500			Glutaredoxin family protein (....		Lus10017148 [exp]	7.0	0.9226
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10041055 [exp]	7.3	0.9353
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10015038 [exp]	8.3	0.9011
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020114 [exp]	8.8	0.9171
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10002419 [exp]	8.9	0.9351
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021936 [exp]	9.5	0.9235

Compare expression of checked genes

Lus10001785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.