Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56750 458 / 2e-162 NDL1 N-MYC downregulated-like 1 (.1) AT5G11790 455 / 2e-161 NDL2 N-MYC downregulated-like 2 (.1) AT2G19620 433 / 1e-152 NDL3 N-MYC downregulated-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020241 [exp] 653 / 0 AT5G56750 431 / 1e-151 N-MYC downregulated-like 1 (.1) Lus10026433 [exp] 387 / 6e-135 AT5G56750 456 / 2e-162 N-MYC downregulated-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G038100 [exp] 568 / 0 AT5G56750 462 / 6e-164 N-MYC downregulated-like 1 (.1) Potri.006G230800 [exp] 477 / 8e-170 AT5G56750 524 / 0.0 N-MYC downregulated-like 1 (.1) Potri.018G067700 [exp] 474 / 6e-169 AT5G56750 552 / 0.0 N-MYC downregulated-like 1 (.1) Potri.018G054900 [exp] 462 / 5e-164 AT5G11790 516 / 0.0 N-MYC downregulated-like 2 (.1) Potri.010G135500 [exp] 44 / 0.0002 AT1G68890 1931 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03096 [flax] [poplar] Ndr Ndr family
Representative CDS sequence Show only first row Show all	>Lus10001786 pacid=23174790 polypeptide=Lus10001786 locus=Lus10001786.g ID=Lus10001786.BGIv1.0 annot-version=v1.0 ATGGAGGGTTCGAGCGGCGAATCGGTTTCAATACACATTGACGACATGCTGTCATTTGGTGGGAAGGAGTGTGTGGTGAAGACGAGCAAAGGAGCAATCT CTGTGTATGTCTGTGGGGATCAAGAGAAGCCGCCTTTGATTACCTACCCAGATGTTGGTTTGAACTTCATGTCTTGCTTCCAAGGTCTATTCTATTGCCC GGAAGCAGCTCCATTGTTGCTTCACAACTTCTGCATATACCACATTGATGCCCCGGGCCACGAGTTGGGAGCTGATGTTATATCTCCAGATGCTCCATTG CTCAGTGTTGATGACTTGGCAGACCAGGTTGCCGAAATTCTTGATTACTTTGGGCTGCAGCAAGTCCTATGCTTAGGTGTTACTGCTGGTGCCTATATTC TTACACTCTTTGCAATGAAATATAGAGAACGCGTGCTCGGACTGATTCTTGTTTCCCCCATATGCAAAACTCCCTCATGGACTGAATGGCTTTACAATAA GGTGTTATCGAATGTCTTGTACTTCTACGGAATGTGTGGGATAATGAAGGAATGCCTTCTCCAGCGTTACTTCAGTAAGGAAATGAGGTGCGGTGTGCAT GGTACGGAATCAGACATCATTCAGGCTTGCCGAAGGTTGCTTGACGAAAGGCAGAGTTTGAACGTGAAGCGGTTTCTTCAAGCAGTTAACGAGAGGCACG ATCTTTCGGACAGCTTGCACAAGCTGGAGTGCAAGACGCTTGTATTCGTGGGTGAAAGCAGTCCGTTCAGGGACGAAGCTGTGTACATGAGCTCGAGAAT GGGCAAGAAAAGCTGCGCGCTTGTCGAGGTTCAGGCATGTGGATCATTGGTTACAGAAGAACATCCATATGCAATGATAATCCCAATGGAGTTCTTCCTC ATGGGTTTCGGTTTCTACAGACAGCCGACCGAGTCTTCTTCTTCTTCGTCATCGAGTAATGGATCCAACCATTCGAGTCCGTTGGGGGGATGCTGCATTG CACCGGAGCTTCTGTCTCCGGAGAGCCTTGGGATCAAGCTCAAACCAATCAAAACCCGTATAAACAGCTGCATGATCTGA
AA sequence Show only first row Show all	>Lus10001786 pacid=23174790 polypeptide=Lus10001786 locus=Lus10001786.g ID=Lus10001786.BGIv1.0 annot-version=v1.0 MEGSSGESVSIHIDDMLSFGGKECVVKTSKGAISVYVCGDQEKPPLITYPDVGLNFMSCFQGLFYCPEAAPLLLHNFCIYHIDAPGHELGADVISPDAPL LSVDDLADQVAEILDYFGLQQVLCLGVTAGAYILTLFAMKYRERVLGLILVSPICKTPSWTEWLYNKVLSNVLYFYGMCGIMKECLLQRYFSKEMRCGVH GTESDIIQACRRLLDERQSLNVKRFLQAVNERHDLSDSLHKLECKTLVFVGESSPFRDEAVYMSSRMGKKSCALVEVQACGSLVTEEHPYAMIIPMEFFL MGFGFYRQPTESSSSSSSSNGSNHSSPLGGCCIAPELLSPESLGIKLKPIKTRINSCMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10001786 [exp]	0	1
AT4G01200			Calcium-dependent lipid-bindin...		Lus10008731 [exp]	1.0	0.8476
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016497 [exp]	7.1	0.8105
AT5G42660			Protein of unknown function (D...		Lus10024684 [exp]	7.1	0.8243
AT5G17860		CAX7	calcium exchanger 7 (.1)		Lus10013635 [exp]	8.4	0.7889
AT3G28480			Oxoglutarate/iron-dependent ox...		Lus10032183 [exp]	11.5	0.7857
AT1G01540			Protein kinase superfamily pro...		Lus10036386 [exp]	13.7	0.7961
AT5G43980		PDLP1, PDLP1A	PLASMODESMATA-LOCATED PROTEIN ...		Lus10001418 [exp]	14.1	0.8056
AT4G16695			unknown protein		Lus10028968 [exp]	15.4	0.7730
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Lus10006805 [exp]	16.5	0.7691
AT4G38810			Calcium-binding EF-hand family...		Lus10042380 [exp]	17.0	0.7392

Compare expression of checked genes

Lus10001786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.