Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28150 353 / 3e-123 Plant protein of unknown function (DUF868) (.1) AT3G04860 344 / 2e-119 Plant protein of unknown function (DUF868) (.1) AT4G12690 194 / 1e-60 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) AT2G04220 194 / 3e-60 Plant protein of unknown function (DUF868) (.1) AT5G48270 179 / 3e-54 Plant protein of unknown function (DUF868) (.1) AT2G27770 172 / 2e-51 Plant protein of unknown function (DUF868) (.1) AT5G11000 156 / 6e-45 Plant protein of unknown function (DUF868) (.1) AT3G13229 145 / 9e-42 Plant protein of unknown function (DUF868) (.1) AT2G25200 129 / 7e-35 Plant protein of unknown function (DUF868) (.1) AT2G36470 91 / 5e-21 Plant protein of unknown function (DUF868) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020240 [exp] 564 / 0 AT5G28150 356 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10022050 [exp] 286 / 8e-96 AT5G28150 310 / 2e-105 Plant protein of unknown function (DUF868) (.1) Lus10042600 [exp] 285 / 2e-95 AT5G28150 310 / 3e-105 Plant protein of unknown function (DUF868) (.1) Lus10043317 [exp] 196 / 1e-60 AT2G04220 216 / 1e-68 Plant protein of unknown function (DUF868) (.1) Lus10019467 [exp] 194 / 2e-60 AT2G04220 220 / 2e-70 Plant protein of unknown function (DUF868) (.1) Lus10017128 [exp] 172 / 1e-51 AT5G11000 245 / 1e-78 Plant protein of unknown function (DUF868) (.1) Lus10039183 [exp] 164 / 2e-48 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10013755 [exp] 161 / 2e-47 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10006223 [exp] 152 / 3e-44 AT4G12690 213 / 2e-68 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G050900 [exp] 397 / 2e-140 AT5G28150 417 / 2e-148 Plant protein of unknown function (DUF868) (.1) Potri.013G038000 [exp] 393 / 9e-139 AT5G28150 409 / 6e-145 Plant protein of unknown function (DUF868) (.1) Potri.005G210800 [exp] 340 / 1e-117 AT5G28150 359 / 2e-125 Plant protein of unknown function (DUF868) (.1) Potri.002G051600 [exp] 332 / 2e-114 AT5G28150 364 / 2e-127 Plant protein of unknown function (DUF868) (.1) Potri.009G148300 [exp] 204 / 1e-64 AT2G27770 308 / 7e-105 Plant protein of unknown function (DUF868) (.1) Potri.004G187600 [exp] 203 / 5e-64 AT2G27770 305 / 2e-103 Plant protein of unknown function (DUF868) (.1) Potri.015G084500 [exp] 195 / 1e-60 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.012G089100 [exp] 189 / 3e-58 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.010G047700 [exp] 187 / 9e-58 AT5G48270 223 / 3e-71 Plant protein of unknown function (DUF868) (.1) Potri.005G068100 [exp] 187 / 9e-58 AT2G04220 385 / 4e-135 Plant protein of unknown function (DUF868) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05910 [flax] [poplar] DUF868 Plant protein of unknown function (DUF868)
Representative CDS sequence Show only first row Show all	>Lus10001787 pacid=23174801 polypeptide=Lus10001787 locus=Lus10001787.g ID=Lus10001787.BGIv1.0 annot-version=v1.0 ATGAGAGATTTCCCCTCTTGCTTCGGTGAGAATGGAGTACAGGTGGCCGATTACTCCTCGTCTTCCTCTTCATCATCCGCCGCTACTAAATCTGCTCAGA ATGTAGTCACTTGCCTTTACCAATGTCGAATCCGCGGCCGATCCTGCTTGATCACTGTAGCTTGGAGCAGGACCTTAATGGGTCAGGGACTCACCATCAC AATCGAAGACCATTCTTCGAATCAGTGTCTTTGTAAAGTTGAAATCAAGCCCTGGTTGTTCACCAAGCGAAAAGGTTCAAGAAGCATGGAATCAATCGAC ATCTTTTGGGATCTCTCTTCAGCTAAGTTCGGATCAGGCCCTGAACCTCAGCAAGGGTTCTACGTCGCTGTTTTGGCAGATAGGAAAATGGTTATTCTCC TTGGAGACTTGAGGAAAGAAGCTTACAAGAAAACTTGCTTCAATGCTGCCATTCCCAGTCAAGTAGCTAATTCAATCTTTGTAGCTAAGAAAGAACATGT CTTTGGCAAGAAAGTGTTTGCCACCAGAGCTCAGTTCTGCAACGAAGGGCGAGTCCACGATCTAGTGCTCGAATGTGAAACGGTCGGGGATGTTAGTGAT CCGTGTCTTGTGGTTCGAGTGGACTGTAAGACTGTGATGCAGGTCAAGAGACTGCGGTGGAAGTTTCGTGGTAATCATACTGTGGTGGTTGATGGGATGG AAGTGGAAGTCCTGTGGGATGTTTATAACTGGTTATTTGGTGTTGGGAATGCTGCTGTGTTCATGTTCAGGACTTGTGGGAAGTACTTGTGGCACGATTC GAGCTCGTGGAGGCTTCTTGATTCGAAATCGGGTACTCATGATTTTTCGCTGCTGTTGTATGCTTGCAAAGAGTGA
AA sequence Show only first row Show all	>Lus10001787 pacid=23174801 polypeptide=Lus10001787 locus=Lus10001787.g ID=Lus10001787.BGIv1.0 annot-version=v1.0 MRDFPSCFGENGVQVADYSSSSSSSSAATKSAQNVVTCLYQCRIRGRSCLITVAWSRTLMGQGLTITIEDHSSNQCLCKVEIKPWLFTKRKGSRSMESID IFWDLSSAKFGSGPEPQQGFYVAVLADRKMVILLGDLRKEAYKKTCFNAAIPSQVANSIFVAKKEHVFGKKVFATRAQFCNEGRVHDLVLECETVGDVSD PCLVVRVDCKTVMQVKRLRWKFRGNHTVVVDGMEVEVLWDVYNWLFGVGNAAVFMFRTCGKYLWHDSSSWRLLDSKSGTHDFSLLLYACKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28150			Plant protein of unknown funct...		Lus10001787 [exp]	0	1
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Lus10014665 [exp]	2.4	0.9080
AT1G67190			F-box/RNI-like superfamily pro...		Lus10020611 [exp]	4.2	0.8716
AT3G12610		DRT100	DNA-DAMAGE REPAIR/TOLERATION 1...		Lus10015700 [exp]	6.9	0.8799
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10027336 [exp]	7.1	0.8686
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10039222 [exp]	7.6	0.9046
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10039038 [exp]	14.1	0.8562
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10018774 [exp]	17.0	0.8766
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10014356 [exp]	21.3	0.8790
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10012151 [exp]	21.4	0.8552
AT4G12690			Plant protein of unknown funct...		Lus10036872 [exp]	24.5	0.8952

Compare expression of checked genes

Lus10001787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.