Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69550 142 / 2e-34 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G36930 137 / 4e-33 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G72930 122 / 2e-32 TIR toll/interleukin-1 receptor-like (.1.2) AT1G72920 118 / 2e-29 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT1G72900 119 / 5e-29 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G72910 118 / 2e-28 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G72940 117 / 3e-28 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G72890 117 / 1e-27 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) AT1G27180 120 / 2e-27 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 119 / 3e-27 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035674 [exp] 624 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018308 [exp] 573 / 0 AT1G69550 147 / 1e-35 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10037406 [exp] 573 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020238 [exp] 572 / 0 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10042714 [exp] 559 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000945 [exp] 530 / 4e-180 AT1G69550 112 / 3e-25 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10020237 [exp] 514 / 7e-175 AT1G69550 99 / 3e-21 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10004115 [exp] 519 / 1e-161 AT5G27970 689 / 0.0 ARM repeat superfamily protein (.1.2) Lus10008026 [exp] 392 / 3e-125 AT5G36930 204 / 1e-54 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G017082 [exp] 164 / 1e-41 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 162 / 4e-41 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 158 / 5e-41 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 157 / 8e-41 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002428 [exp] 154 / 1e-39 AT5G36930 387 / 2e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 154 / 4e-39 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143100 [exp] 147 / 4e-39 AT5G36930 234 / 1e-69 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 155 / 7e-39 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001314 [exp] 142 / 4e-38 AT5G36930 183 / 1e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 152 / 5e-38 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10001788 pacid=23174804 polypeptide=Lus10001788 locus=Lus10001788.g ID=Lus10001788.BGIv1.0 annot-version=v1.0 ATGGAGCAAATGAACATGCGGTCCGGTGAAGGAACAACAGTCTCAGATTCTTATTCAGAATCACAAACATCAACCGTAGAGCTGCAAACTGTTGTCAGTG CTTTCGAGTATGATGTTTTCTTGAGCTTTAGAGGCCCTGAGGTCCGCAATTGTTTTGCGGACTGTCTCTACCGCCGTTTGGACGATGCCAAAATCCGCAC CTTCAGGGACGAGGAAGAGCTTCGCAAGGGGGAGAGCATTGGACCTTCCTTGGGTCAAGCTATTACCGAATCGAAGATTTACATCCCGATTTTAACAAAT TGCTATGCTGCTAGCAAATGGTGCCTTCAAGAACTAGCCAAGATGGTTGAGTGTCGCAAGAAAGAGAAGGGGCACATCATATTGCCCATTTTCTATTTCA TGGACCCTAGAGATGTCCGACATCAAGCGGGTCCATACGAGGATACATTTGAACAGCATAGTAATAAACATGACCCCATAACCGTACAAGAATGGAGGGC AGCTCTTGAAGAGGTCGGGCAAATGAAAGGCTGGCATATTACCGAAATAGACGGTGACATTCTTCCTGATATTCGTTGGCTTAGACTGCGTGGATCTGAA TCACTACTCACCGACCTCAACCTGGAGAAAGTGGTCATTCTTGAGTTAGAAGAATGCTGGGTAACAGATGATTGGAGAGGATGGAATGCAATCCAGGTGG CACGTAAGCTCCAAGTTATAAATCTACGTGGCTGCTTTAATTTACACAAGGTTCCCAACTTGACCCAATGTGCGAACCTAGAGTCTATAGATCTCACCGG CTGTTTTCAAATGAGCGGGGAACTCCATATTGGAAGTTTCAGGAATTTGAAAGTTGTTAGGCATCCTGGGTATGGAACTATTGGCTTAGTAGGTGACATG GGAAAGCTTCAAAAACTCCAAGAGATTAACACTGGGAAGTTGGTAAGCGGAGCCCAAGAAATAGTACTCCCCACAAGCTTAAAACGCCTAACCATCTCAT CTCCTAATGTTTCCAATCTTCTGGATCTTAAAGACCTGGAGGAGCTATGCTTTGTGGAATGCGATGGTGCTCCTGTAATTCATGGGGATATATGGAAGCT GACGAAGTTAAAGACTTTACAGCTGTGCCACTGCTCTTGCGATGGTAGTCTACTGGCGGATAAGGACGGTACCCTTCCGTCATCTCTAACCTCCCTTATG TTTAAAAGGTGTTGGGGTTTGACTAGACTACCAAATCTTGGAATTCTCAATAACTTGATGGAACTGCGACTGAATAGTGTCGGAGTAACTGAAATTCACA ATCTGGGAGAGTTGTGGATGCTGGAAGTCCTCGAAATATCTTGGTCAGATGTAGGCAATCTCTACGACCTTGAAAATCTCGTGCAGCTGAAAGAGCTGAC CCTGAAAGGCTGCCATAGACTGGAGAATCTACCCAGTCTATCAAACTTGATCAAGTTACACAGTCTAGTGATCATTAAGTGCTCACTTCTCAGAAAAATT CAAGGCCTGGTAGAATTGAGGCAGTCTTTGTTACATCTGGAAGTAAGTGATTGTGATAAGCTAGAAAGCATCCGGTTCATTGAATTTCTCGAAGGGCTGG AAAGTTTGACATTGGACTCAGAAAAAATATATCCACGTTTCGGAGATGACCTGACAGAAGACGGGGATAGTCTCCCGATTCGTCGCTGCCAGTACCTCGA TCCACACAAACCATTTCCAGACCTCTCGCGTCTCCAGAACCTAAAACAACTGTCCATTTCTTGGTGGAGACAGTTACCAGAGGTTATAAGTCTTGGAAGA TTAATATCACTAAAAACCTTGAAAATGATTGGCTGCAAGTCACTTAAGAGGTTGCCTGATCTATCAGGTCTCACAAACTTGAAGAATCTCGATGTTAGCT ACTGCATACAGTTGGTTGATGTCACAGGCATCGACCGATTGGAATCACTGCAAAAACTGAAATTCTCTGACTGCTGCTCGCTTAAGGAGTTGCCTGATAT ATCTGGTCTGAAGAGTTTGGAGGAGTTGATCGTCAATGAATGCACTGAGCTAATTAAGGTCACTGGTTTGGCGAAACTGGAGAAGTTGCAGGAATTAGAC ATGACTGATTGCAAGTCGATTAAGGAGTTGCCAGATATGTCAGGCCTCAAGAATTTAAAGAAATTATGTCTCAGGGAATGCACGAAATTGAAGAAAGTGA AAGGACTCGAGGAATTAGATCACTTAACATACGTGGATATGGATGAAAGGTTACGATCAAAGGTTCGTTTCAAATTCGTTGTATGGGGTGGAAGGAACTG A
AA sequence Show only first row Show all	>Lus10001788 pacid=23174804 polypeptide=Lus10001788 locus=Lus10001788.g ID=Lus10001788.BGIv1.0 annot-version=v1.0 MEQMNMRSGEGTTVSDSYSESQTSTVELQTVVSAFEYDVFLSFRGPEVRNCFADCLYRRLDDAKIRTFRDEEELRKGESIGPSLGQAITESKIYIPILTN CYAASKWCLQELAKMVECRKKEKGHIILPIFYFMDPRDVRHQAGPYEDTFEQHSNKHDPITVQEWRAALEEVGQMKGWHITEIDGDILPDIRWLRLRGSE SLLTDLNLEKVVILELEECWVTDDWRGWNAIQVARKLQVINLRGCFNLHKVPNLTQCANLESIDLTGCFQMSGELHIGSFRNLKVVRHPGYGTIGLVGDM GKLQKLQEINTGKLVSGAQEIVLPTSLKRLTISSPNVSNLLDLKDLEELCFVECDGAPVIHGDIWKLTKLKTLQLCHCSCDGSLLADKDGTLPSSLTSLM FKRCWGLTRLPNLGILNNLMELRLNSVGVTEIHNLGELWMLEVLEISWSDVGNLYDLENLVQLKELTLKGCHRLENLPSLSNLIKLHSLVIIKCSLLRKI QGLVELRQSLLHLEVSDCDKLESIRFIEFLEGLESLTLDSEKIYPRFGDDLTEDGDSLPIRRCQYLDPHKPFPDLSRLQNLKQLSISWWRQLPEVISLGR LISLKTLKMIGCKSLKRLPDLSGLTNLKNLDVSYCIQLVDVTGIDRLESLQKLKFSDCCSLKELPDISGLKSLEELIVNECTELIKVTGLAKLEKLQELD MTDCKSIKELPDMSGLKNLKKLCLRECTKLKKVKGLEELDHLTYVDMDERLRSKVRFKFVVWGGRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69550			disease resistance protein (TI...		Lus10001788 [exp]	0	1
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10030438 [exp]	1.7	0.9191
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10030538 [exp]	5.9	0.9238
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10002414 [exp]	6.0	0.9030
AT1G27520			Glycosyl hydrolase family 47 p...		Lus10004233 [exp]	7.0	0.9061
AT1G13820			alpha/beta-Hydrolases superfam...		Lus10037072 [exp]	8.5	0.8996
AT1G22630			unknown protein		Lus10018614 [exp]	8.7	0.9229
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022541 [exp]	8.8	0.9017
AT1G09310			Protein of unknown function, D...		Lus10010904 [exp]	11.0	0.9028
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10012887 [exp]	11.3	0.9130
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10033087 [exp]	11.8	0.9101

Compare expression of checked genes

Lus10001788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.