Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04910 768 / 0 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT5G28080 647 / 0 WNK9 Protein kinase superfamily protein (.1.2) AT3G22420 606 / 0 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT3G48260 500 / 2e-171 WNK3 with no lysine (K) kinase 3 (.1) AT3G51630 463 / 2e-156 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G58350 461 / 4e-155 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT1G49160 446 / 1e-149 WNK7 Protein kinase superfamily protein (.1.2) AT5G41990 429 / 4e-143 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT3G18750 411 / 9e-136 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT1G64630 396 / 1e-130 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020236 [exp] 1273 / 0 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10004904 [exp] 659 / 0 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) Lus10010547 [exp] 634 / 0 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10041947 [exp] 506 / 2e-172 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10017957 [exp] 496 / 5e-163 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1) Lus10008590 [exp] 452 / 4e-152 AT5G58350 624 / 0.0 with no lysine (K) kinase 4 (.1) Lus10024192 [exp] 444 / 8e-150 AT5G58350 540 / 0.0 with no lysine (K) kinase 4 (.1) Lus10030229 [exp] 451 / 3e-149 AT3G18750 561 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) Lus10042223 [exp] 444 / 3e-149 AT5G58350 630 / 0.0 with no lysine (K) kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G036300 [exp] 890 / 0 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.005G049800 [exp] 886 / 0 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.008G152300 [exp] 738 / 0 AT3G04910 726 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 723 / 0 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.015G084600 [exp] 506 / 9e-173 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.012G086700 [exp] 498 / 2e-169 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.013G155100 [exp] 480 / 4e-162 AT5G58350 689 / 0.0 with no lysine (K) kinase 4 (.1) Potri.016G134600 [exp] 479 / 1e-161 AT3G51630 591 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Potri.019G128600 [exp] 474 / 7e-160 AT5G58350 662 / 0.0 with no lysine (K) kinase 4 (.1) Potri.005G057300 [exp] 462 / 1e-154 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10001789 pacid=23174807 polypeptide=Lus10001789 locus=Lus10001789.g ID=Lus10001789.BGIv1.0 annot-version=v1.0 ATGAACGGTGTAGATTGCTCCGAGTCCGATTTCGTCGAAGTTGATCCCACTGGAAGATACGGCAGATATAATGAAGTTCTGGGGAAAGGAGCTTCAAAGA CAGTTTATAGAGCTTTTGATGAGTATGAAGGGATAGAAGTGGCGTGGAACCAAGTGAAGCTTTATGACTTCTTACAGAGTCCTGAGGATCTGGAGAGGCT TTACTGTGAGATTCATCTGCTCAAGACACTGAAGCACAAGAACATCATGAAGTTCTACACTTCCTGGGTTGACATTGGTAACCGGAACATCAATTTCGTC ACCGAGATGTTCACTTCCGGCACCTTGAGACAGTACCGGTTGAAGCATAGGAGGGTAAATATAAGAGCAGTGAAGCAGTGGTGTAGGCAGATCTTGAAAG GGCTACTGTATCTCCATAGCCATGACCCGCCAGTCATTCATAGAGATCTCAAGTGTGACAACATCTTCATTAATGGCAACCAAGGTGAAGTCAAGATTGG AGATCTTGGCCTTGCTGCTATCCTAAGGAAGTCTCATGCTGACCACTGTGTTGGAACACCAGAGTTCATGGCACCTGAAGTGTATGAAGAAGCATACAAT GAATTGGTTGACATTTACTCATTTGGAATGTGCATTTTGGAGATGGTCACTTTCGAGTATCCCTACAGTGAATGCACCCACCCTGCTCAGATTTACAAGA AAGTCATCTCAGGTAGAAAGCCTGATTCTTTGTATAAAGTGAAGGATCCAGAAGTAAGGCAGTTTGTGGAGAAATGCTTGGCTACTGTATCTCTCAGGCT ATCTGCTAGAGAGTTGCTGAATGACCCTTTTCTACGAATCGATGAATACGATCCAGATCTACAGCTATTGGATTGCGGAAAGGAGATTGGTGAGATTGAT CCATTTATGAGGCAGCCTTACCTTGATCTTCATGACAGCATGTATTCTTACAGCAATGGTTATAACCTTGATGGATATGGTTACGATGGTCACAATGAGT TGGATTATCATCATGCTGCTGAAATGGAGCCGACGGGGATCGAGCTTTTCGAGTACCATGATGATGACGAGGATGATCATTCGACGAATGTCGATATCAG TATCAAAGGCAAGAGGAGAGATGATGGTGGCATCTTTTTGCGACTCCGAATTGCTGACAAAGAAGGTCGAATTCGAAACATTTACTTCCCTTTCGACTTG GAAACGGATACAGCATTGAGTGTTGCAACTGAAATGGTTGGGGAGCTGGATATTACAGATCAAGAAGTGACGAAAATTGCAGACATGATTGATGGAGAGA TTGCTTCCTTGGTACCGGACTGGAGGCTAGGGCCTGGTATTGATGAAACTCCTCGATTTGCGAACCAAGCCTTCTGTCACAACTGTGCCTCGACCCGGAC ATCGACTGGTTCCCTCATAGAGTTTATGTCGAGCCTTCCGTGTTGCAGAAACGGATGCGCTGCTTCAATGCACGGTAGGTTCGAAGAGGTAACGTTTCAG CCCGACGATTCGGACCACCACCGCCGCCACCACGATCCCAATGCGTGGGACCAGCACGAAAGCCGGAACATCACGCCAGCAGATTCCGGCGGGGTAAGCC ACTCGGACGAAGACGAAAAGCATGTCCCTTTAGTCAGTACTGAAGTAGTTGCTTCTCTTCCAAGAAAGTCCACCACTGAAGTTGCTTGTCCTCCAAGAAA GTCCAGTCCACATAATTTCAAGGGCTCGTGCTCTTTCCCCGAGCTGGCCACGATGTCCCGGGACCCTAACGAGAACGACATCCAGCACGAGCTAAGATGG ATCAAGGCCAAGTACCAGATCCAGATGAGGGAGCTCAAGGATCAACAGTTAGAAGAAGAAGAAGAAGACATTTCGTCATGTGATGTGTTGAAGTCGGCTT TGAAGTCGTTGCAGCAAGGAGGCGGCAGCAAGGGGGGATCTCGAAACCTCCTCCCTCGAGATAGCAATCTCGAGTCCCCCTCGTCGCCATTGTTTGCTAC TGCCAACAGCTTCTATACTGGTTCATTGCTTCCACACTCACTTCACAGGACTACATCCTTACCAGTTGATGCTGTTGATGTATAA
AA sequence Show only first row Show all	>Lus10001789 pacid=23174807 polypeptide=Lus10001789 locus=Lus10001789.g ID=Lus10001789.BGIv1.0 annot-version=v1.0 MNGVDCSESDFVEVDPTGRYGRYNEVLGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDIGNRNINFV TEMFTSGTLRQYRLKHRRVNIRAVKQWCRQILKGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSHADHCVGTPEFMAPEVYEEAYN ELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGRKPDSLYKVKDPEVRQFVEKCLATVSLRLSARELLNDPFLRIDEYDPDLQLLDCGKEIGEID PFMRQPYLDLHDSMYSYSNGYNLDGYGYDGHNELDYHHAAEMEPTGIELFEYHDDDEDDHSTNVDISIKGKRRDDGGIFLRLRIADKEGRIRNIYFPFDL ETDTALSVATEMVGELDITDQEVTKIADMIDGEIASLVPDWRLGPGIDETPRFANQAFCHNCASTRTSTGSLIEFMSSLPCCRNGCAASMHGRFEEVTFQ PDDSDHHRRHHDPNAWDQHESRNITPADSGGVSHSDEDEKHVPLVSTEVVASLPRKSTTEVACPPRKSSPHNFKGSCSFPELATMSRDPNENDIQHELRW IKAKYQIQMRELKDQQLEEEEEDISSCDVLKSALKSLQQGGGSKGGSRNLLPRDSNLESPSSPLFATANSFYTGSLLPHSLHRTTSLPVDAVDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10001789 [exp]	0	1
AT1G33811			GDSL-like Lipase/Acylhydrolase...		Lus10000893 [exp]	3.2	0.8463
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10013469 [exp]	5.3	0.8107
AT5G23730		EFO2, RUP2	REPRESSOR OF UV-B PHOTOMORPHOG...		Lus10027454 [exp]	7.3	0.8383
AT3G60320			Protein of unknown function (D...		Lus10028207 [exp]	7.4	0.7756
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10020236 [exp]	8.2	0.7695
AT3G54030			Protein kinase protein with te...		Lus10027743 [exp]	9.2	0.8253
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10005248 [exp]	10.0	0.8364
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10017495 [exp]	10.9	0.7744
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042378 [exp]	14.4	0.8550
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10024854 [exp]	14.4	0.8649

Compare expression of checked genes

Lus10001789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.