Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013260 [exp] 104 / 2e-29 ND 37 / 0.003 Lus10013258 [exp] 95 / 1e-25 ND / Lus10013259 [exp] 92 / 3e-24 ND / Lus10030782 [exp] 90 / 9e-24 ND 39 / 4e-04 Lus10030783 [exp] 81 / 2e-20 ND 35 / 0.009 Lus10034545 [exp] 76 / 3e-18 ND / Lus10013255 [exp] 71 / 2e-16 ND / Lus10030775 [exp] 70 / 1e-15 ND / Lus10032027 [exp] 69 / 1e-15 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001790 pacid=23169679 polypeptide=Lus10001790 locus=Lus10001790.g ID=Lus10001790.BGIv1.0 annot-version=v1.0 ATGCAACTTTTCGATCACCCAAATTACAGACTCATGATTGCAATAACCACCGTAGTTATGTTACTTGTTGTCGCGGTTGCCATACAATCTTGCAGCAAAA AGGCACCGTCAGGTCACGGCCCTTGTAAAGGGCACTACGCTGTATGCGTAAAGACACCACTCAGGAAGTTATTGGAGAACACGGCGTACGCCGCCGATGA CACGTTCACCGCATCTCAACCGGACGGACAACCAAGTGGCAGATTTAGGGGTCACGCGACTTGCGTTGTTACATATGGCCAGGCCGATTGCCGGAGCTGC CTTAGTGGCGCCAAAGAGTGGTTGTCCACCTATTGTGCTAGTAAGGATCATAGCAAAGGCCATTACTCTTTTGGTATTTGCGCCATGTCTTTCCAACAAA TTGACCAATTGTACGTCCGCCTCGGAGTCTAA
AA sequence Show only first row Show all	>Lus10001790 pacid=23169679 polypeptide=Lus10001790 locus=Lus10001790.g ID=Lus10001790.BGIv1.0 annot-version=v1.0 MQLFDHPNYRLMIAITTVVMLLVVAVAIQSCSKKAPSGHGPCKGHYAVCVKTPLRKLLENTAYAADDTFTASQPDGQPSGRFRGHATCVVTYGQADCRSC LSGAKEWLSTYCASKDHSKGHYSFGICAMSFQQIDQLYVRLGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001790 [exp]	0	1
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000683 [exp]	2.0	1.0000
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	2.4	1.0000
					Lus10006164 [exp]	3.5	1.0000
AT5G13660			unknown protein		Lus10005963 [exp]	4.2	1.0000
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030409 [exp]	5.5	1.0000
AT5G20260			Exostosin family protein (.1)		Lus10039981 [exp]	6.0	1.0000
AT2G01690			ARM repeat superfamily protein...		Lus10003679 [exp]	6.0	0.9937
AT1G73700			MATE efflux family protein (.1...		Lus10042705 [exp]	6.5	1.0000
AT4G38260			Protein of unknown function (D...		Lus10016023 [exp]	6.9	0.9994
AT4G02320			Plant invertase/pectin methyle...		Lus10001467 [exp]	7.7	0.9887

Compare expression of checked genes

Lus10001790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.