Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28050 237 / 5e-81 Cytidine/deoxycytidylate deaminase family protein (.1.2) AT3G05300 142 / 1e-44 Cytidine/deoxycytidylate deaminase family protein (.1) AT1G68720 74 / 1e-15 ATTADA, TADA ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) AT1G48175 40 / 0.0002 TAD1, EMB2191 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015942 [exp] 279 / 9e-98 AT5G28050 288 / 3e-101 Cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10019153 [exp] 73 / 2e-15 AT1G68720 301 / 2e-84 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Lus10034402 [exp] 73 / 2e-15 AT1G68720 436 / 2e-131 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Lus10028482 [exp] 44 / 1e-05 AT1G48175 269 / 5e-93 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1) Lus10009163 [exp] 41 / 0.0001 AT1G48175 265 / 1e-91 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G049300 [exp] 250 / 5e-86 AT5G28050 281 / 4e-98 Cytidine/deoxycytidylate deaminase family protein (.1.2) Potri.013G036000 [exp] 245 / 7e-84 AT5G28050 275 / 1e-95 Cytidine/deoxycytidylate deaminase family protein (.1.2) Potri.010G003500 [exp] 241 / 1e-82 AT5G28050 267 / 2e-92 Cytidine/deoxycytidylate deaminase family protein (.1.2) Potri.008G111100 [exp] 79 / 2e-17 AT1G68720 522 / 3e-162 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Potri.010G132600 [exp] 72 / 4e-15 AT1G68720 555 / 2e-174 ARABIDOPSIS THALIANA TRNA ADENOSINE DEAMINASE A, tRNA arginine adenosine deaminase (.1) Potri.006G075300 [exp] 45 / 4e-06 AT1G48175 227 / 1e-76 tRNA adenosine deaminase 1, embryo defective 2191, Cytidine/deoxycytidylate deaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0109 [flax] [poplar] CDA PF00383 [flax] [poplar] dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Representative CDS sequence Show only first row Show all	>Lus10001791 pacid=23169676 polypeptide=Lus10001791 locus=Lus10001791.g ID=Lus10001791.BGIv1.0 annot-version=v1.0 ATGGCAGATGGCAACGCTGTGAAAGACAGAGACCACAAGTTCTTGACTAAAGCTGTTGAAGAAGCGTACAAAGGTGTTGAATGTGGACATGGAGGTCCTT TTGGCGCTGTCGTTGTTTGCAATGACGAAGTTGTGGTTAGCTGTCACAACATGGTCATGGAACACACTGACCCAACTGCTCACGCGGAGGTCACAGCTGT TAGAGAGGCATGTAAAAAGCTCAACAGAATTGAGCTGTCGGATTGCGAGATTTATGCATCCTGTGAACCATGCCCAATGTGCTTTGGGGCCATCCATCTG TCTAGAATCAAGAGGCTGGTCTATGGAGCCAAAGCTGAAGCAGCAATTGCGATTGGTTTCGATGATTTCATTGCTGATGCGTTGAGAGGAACAGGGTTCT ACCAGAAGGCTAATTTGGAGATCAAGCAGGCTGATGGCAGCGGTGCTCTTATTGCAGAACAAGTGTTCGAGAACACCAAGGCCAGGTTTACCATGTACTG A
AA sequence Show only first row Show all	>Lus10001791 pacid=23169676 polypeptide=Lus10001791 locus=Lus10001791.g ID=Lus10001791.BGIv1.0 annot-version=v1.0 MADGNAVKDRDHKFLTKAVEEAYKGVECGHGGPFGAVVVCNDEVVVSCHNMVMEHTDPTAHAEVTAVREACKKLNRIELSDCEIYASCEPCPMCFGAIHL SRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKANLEIKQADGSGALIAEQVFENTKARFTMY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28050			Cytidine/deoxycytidylate deami...		Lus10001791 [exp]	0	1
AT5G28050			Cytidine/deoxycytidylate deami...		Lus10015942 [exp]	2.8	0.8827
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10017172 [exp]	3.2	0.8762
AT5G01970			unknown protein		Lus10031947 [exp]	6.6	0.8615
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027570 [exp]	6.7	0.8722
AT1G47830			SNARE-like superfamily protein...		Lus10024337 [exp]	7.5	0.7933
AT1G59650		CW14	Protein of unknown function (D...		Lus10010740 [exp]	8.7	0.8160
AT3G05940			Protein of unknown function (D...		Lus10001058 [exp]	9.5	0.8608
AT3G04780			Protein of unknown function (D...		Lus10020246 [exp]	9.9	0.8471
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10022524 [exp]	12.0	0.8407
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10019047 [exp]	15.9	0.8189

Compare expression of checked genes

Lus10001791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.