Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73430 717 / 0 sec34-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015940 [exp] 852 / 0 AT1G73430 1319 / 0.0 sec34-like family protein (.1.2) Lus10000075 [exp] 121 / 2e-33 AT1G73430 117 / 4e-32 sec34-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G138900 [exp] 745 / 0 AT1G73430 1316 / 0.0 sec34-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04136 [flax] [poplar] Sec34 Sec34-like family
Representative CDS sequence Show only first row Show all	>Lus10001792 pacid=23169674 polypeptide=Lus10001792 locus=Lus10001792.g ID=Lus10001792.BGIv1.0 annot-version=v1.0 ATGGCGGCGAAAGGAACTCAACCGAACATGCACAAATCCGTTGCAATTTGTAAGGGATACAACTTTGCTTCTACCTGGGAACAGAATGCTCCTCTTACTG AGCAACAGCAAGCCGCGATTCTTTCACTCTCTCGTGCTGTGGCGGAGCGGCCGTATCCTGCCAATTTTTTTTACAAGTGGTTCACGGATCTTGAATCAGC AATGAAATCTGAGACAGAGGAAAAATATCAGCACTATGTGAACACATTAACAGACCGCATTCAGACGTGTGATGATATTCTTCGTCAGGTAGATGAAACA TTAGACTTCTTCAATAGCCTACAGTTGCAACACAAAGCAGTAGCTACAAAGACAAAGACTCTCCATGATGCTTGTGATCGATTGTTGGTAGAGAAGCAGA GACTAATGGAATTTGCAGATGCACTACGGAGTAAACTCAGTTACTTTGATGAATTGGAGAATATTTCTACCAATTTTTATGCTCCAAACATGAATGTTGG GAATGGGAACTTTCTACCTCTACTCAAGCGGCTTGATGAATGTATAGCGTATGTCGAAAGCAATCCACAATATGCTGAATCTAGTGTTTACTTGCTCAAA TTTCGGCAGCTCCAGTCTCGGGCCCTGGGTTTGATTCGTTCTCATGTGCTGTCAGTCTTGAAAGGTGCATCTTCCCAGGTTCAAGCAGCTATCCGGAGCT CTGGTGGCAGTAAAACGTCTCTTTCTGAGGGCATGGAGGCATCTGTTATCTATGTTCGATTCAAGGCAGCTGCAAGTGAGCTAAAACCTGTTCTGGAGGA AGTAGAAGGTAGATCTGCTCGAAAGGAGTATGTATTGATGCTTGGAGAATGCCATAAGTTGTACTGTGAGCAGAGACTTTCTTTGGTAAAAGGCATAGTG CAACAGCGGATTTCTGAATTTTCCAACAAAGAATCCCTGCCATCTTTAACTAGATCTGGATGTGCATATCTGATGCAGGTTTGTCAACTTGAGCATCAGC TCTTTCATCACTTTTTCCCATCTTCTTCAGAAGACGTTTCGAGTTTGGCTCCATTGATATATCCTCTGGCTACTTACTTGTATGACACCCTACGACCAAA ACTTATACATGAAACAAGTGTTGATCTTCTTTGTGAACTTGTTGATATACTAAAAGTGGAAGTCCTAGGTGACCAGCTTAGCAAGCGGAGTGAATCCTTA GCTGGGCTGCGTCCAACCCTGGAACGGATTTTAGCTGATGTTCATGAGCGATTGACTTTCCGTGCTCGAACTCATATCCGCGATGAGGTATCAACTTAA
AA sequence Show only first row Show all	>Lus10001792 pacid=23169674 polypeptide=Lus10001792 locus=Lus10001792.g ID=Lus10001792.BGIv1.0 annot-version=v1.0 MAAKGTQPNMHKSVAICKGYNFASTWEQNAPLTEQQQAAILSLSRAVAERPYPANFFYKWFTDLESAMKSETEEKYQHYVNTLTDRIQTCDDILRQVDET LDFFNSLQLQHKAVATKTKTLHDACDRLLVEKQRLMEFADALRSKLSYFDELENISTNFYAPNMNVGNGNFLPLLKRLDECIAYVESNPQYAESSVYLLK FRQLQSRALGLIRSHVLSVLKGASSQVQAAIRSSGGSKTSLSEGMEASVIYVRFKAAASELKPVLEEVEGRSARKEYVLMLGECHKLYCEQRLSLVKGIV QQRISEFSNKESLPSLTRSGCAYLMQVCQLEHQLFHHFFPSSSEDVSSLAPLIYPLATYLYDTLRPKLIHETSVDLLCELVDILKVEVLGDQLSKRSESL AGLRPTLERILADVHERLTFRARTHIRDEVST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73430			sec34-like family protein (.1....		Lus10001792 [exp]	0	1
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10013763 [exp]	9.3	0.8404
AT1G73430			sec34-like family protein (.1....		Lus10000075 [exp]	10.2	0.8316
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10037962 [exp]	15.2	0.8353
AT1G11660			heat shock protein 70 (Hsp 70)...		Lus10019627 [exp]	16.6	0.7701
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10033317 [exp]	19.3	0.8039
AT5G11490			adaptin family protein (.1.2)		Lus10011675 [exp]	20.1	0.8242
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10038694 [exp]	22.0	0.8347
AT4G39050			Kinesin motor family protein (...		Lus10041958 [exp]	23.0	0.8142
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10016051 [exp]	23.3	0.8279
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10025509 [exp]	23.5	0.8032

Compare expression of checked genes

Lus10001792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.