Plant FIBer expression Database

Lus10001793 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G73430 533 / 0 sec34-like family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015940
[exp]
623 / 0 AT1G73430 1319 / 0.0 sec34-like family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G138900
[exp]
553 / 0 AT1G73430 1316 / 0.0 sec34-like family protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10001793 pacid=23169675 polypeptide=Lus10001793 locus=Lus10001793.g ID=Lus10001793.BGIv1.0 annot-version=v1.0
ATGACTCCAAAATTCTTGGAGCTGCTATCGTCGTCAGAAGTCACGGTGCTATCAACTGTGTTCTTGGTCATGATAGCAAATTATATTCCATCTGATGAAG
ACTTGAATTACCCTGCGAAGCTGGAGCAAACAAACGAGACAACGCCCGAAGCTTCTTCGGTTGATGAAAATGCGGAGCTGTTTAAAACTTGGTATCCACC
ATTAGAGAAAACTTTATCATGCCTCTCCAAGTTGTACCGCTGTCTTGAACAATCCGTTTTCACTGGTTTGGCACAGGAAGCAGTAGAAGTCTGCTCTGAT
TCCATTCAAAAAGCTAGTAAACTAATTGCCAAGAGAACGACAGCAATGGATGGACAGCTTTTCCTCATTAAGCACCTTTTAATTTTGAGGGAGCAGATTG
CACCATTCGATATAGAGTTCTCTGTCACACACAAGGAGCTAGATTTCTCGCACTTGCTGGAGCACTTGAGACGGATACTTAGAGGTCAGACCTCACTATT
TGATTGGTCAAGATCAACGTCGCTGGCAAGGACGTTGTCTCCTCGAGTTCTAGAAAGCCAAGTTGATGCCAAAAAGGAACTTGAAAAAAGCCTCAAGGCC
ACTTGCGAGGAGTTCATCATGTCAGTGACTAAGTCAGTTGTGGATCCTATGCTCTCATTTGTCACGAAGGTGACAGCTGTGAAAGTGGCCTTGTCTGTCG
GTGGCCAGAGCCAGAGAGCAGACTCGATCATGACCAAGCCAATCAAGGATCAAGCTTTTGCTTCTCCAGGAAAGGTGGCCGAACTTGTTCAGAAGGTGAA
TGCTGCGATCCAGAAAGAGCTGCCGCCAGTGATGGAGAAAATGAAGTTTTACCTGCAGAACCCTTCAACACGAACGATACTTTTCAAACCCATAAAGACG
AACATAGTGGAAGCACACATCCAGGTACAGTCTCTGTTAAGAGCAGAGTACTCCACCGAAGAAGAAACCACCATCAACATGGTATCGATTGCTGACCTGC
AAGCACAGCTAGACACGCTCTTTTCTAACCGTGTGAGGGATAAAATGCAATCAAATCGCGGATTGCCACTCATTGTGAGTCATTCATTTCAGACCCAAAC
CAATCCTCTTGTCCTTCAAGGTTTTGGTTGCGGGGGGGGCGCCGGGGGNNNNNNCAGTTTAAAATTTGAAGATGGAGATGCTCTAATTAATTAG
AA sequence
>Lus10001793 pacid=23169675 polypeptide=Lus10001793 locus=Lus10001793.g ID=Lus10001793.BGIv1.0 annot-version=v1.0
MTPKFLELLSSSEVTVLSTVFLVMIANYIPSDEDLNYPAKLEQTNETTPEASSVDENAELFKTWYPPLEKTLSCLSKLYRCLEQSVFTGLAQEAVEVCSD
SIQKASKLIAKRTTAMDGQLFLIKHLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQTSLFDWSRSTSLARTLSPRVLESQVDAKKELEKSLKA
TCEEFIMSVTKSVVDPMLSFVTKVTAVKVALSVGGQSQRADSIMTKPIKDQAFASPGKVAELVQKVNAAIQKELPPVMEKMKFYLQNPSTRTILFKPIKT
NIVEAHIQVQSLLRAEYSTEEETTINMVSIADLQAQLDTLFSNRVRDKMQSNRGLPLIVSHSFQTQTNPLVLQGFGCGGGAGXXXSLKFEDGDALIN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G73430 sec34-like family protein (.1.... Lus10001793
[exp]
0 1
AT5G43430 ETFBETA electron transfer flavoprotein... Lus10022185
[exp]
3.2 0.9041
AT5G21930 ATHMA8, HMA8, P... ARABIDOPSIS HEAVY METAL ATPASE... Lus10009789
[exp]
3.7 0.8695
AT5G55310 TOP1alpha, TOP1... DNA topoisomerase 1 beta (.1) Lus10043172
[exp]
6.8 0.8477
AT1G79915 Putative methyltransferase fam... Lus10035886
[exp]
6.9 0.8833
AT3G19650 cyclin-related (.1) Lus10002122
[exp]
7.2 0.8436
AT4G26550 Got1/Sft2-like vescicle transp... Lus10032895
[exp]
8.1 0.8628
AT1G28100 unknown protein Lus10002573
[exp]
13.0 0.8307
AT5G61970 signal recognition particle-re... Lus10032538
[exp]
14.9 0.8811
AT2G26810 Putative methyltransferase fam... Lus10036057
[exp]
15.7 0.8356
AT3G25210 Tetratricopeptide repeat (TPR)... Lus10038215
[exp]
17.0 0.8499

Lus10001793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.