Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54520 336 / 2e-113 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015939 [exp] 421 / 5e-147 AT1G54520 437 / 5e-153 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G049500 [exp] 375 / 1e-128 AT1G54520 343 / 1e-115 unknown protein Potri.008G152400 [exp] 79 / 1e-16 AT1G54520 74 / 4e-15 unknown protein Potri.013G036201 [exp] 74 / 4e-16 AT1G54520 74 / 9e-17 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07466 [flax] [poplar] DUF1517 Protein of unknown function (DUF1517)
Representative CDS sequence Show only first row Show all	>Lus10001794 pacid=23169678 polypeptide=Lus10001794 locus=Lus10001794.g ID=Lus10001794.BGIv1.0 annot-version=v1.0 ATGGCGGCAACTGCTTCATTCCTCCACTGGAATCCCTTACAATGGAAGCATCTCCCTTCTCCAATTCCCTCTTCCTTCCCTCTCCGGATTCCCACCACCA ACAAACCTTCCACCATTAATTCCACTTCCAGATTCACCCTCCGTTGTTCCTTCCAAGCGAAGCATCTTAACGCCGATACCGAGGACAAGACTATTCTCCA GAGAGCTTGCGACGCCGCCCTGAAGGCCTTGGAGAAGCTCAAGAAGCCTGCAATAACCGCGGTTCTGATCGCGGCGTTACTGATGTACGATTCCGCAGCC GCATTAGCTGCCTCCGGGGGCAGGATGGGCGGGAAATCGTTTTCCCGTTCCTCTTCGTCTTCTTCCTCGAGGAGTTACTCTGTGCCTCGCGGTTCGGGTC CGAGCTTTTCCTACTCCGCTCCTTACTACGGACCGTCTCCGTTTGGTGGCGGAGGGTTATTCGTGGGGCCGGCTGTTGGAGTTGGAGTGGGAGCTGGCTC CGGTTTGGTTCTGATTCTAGCTGGTTTTGCTGCCTTTGTGTTGGTCTCTGGATTTCTTTCTGATAGGGATGAAGGAGGGATCCTTGCTGCTACGGAGAAA ACCAGTGTTATCAAGCTTCAGGTTGGTTTGCTAGGTATGGCGCGTTCGCTTCAGAAGGATCTTAATAGGATTGCAGAAGTTGCGGATACATCCTCCTCAC AGGGTCTAAGCTATGTATTAACAGAAACGTCACTTGCATTGCTTCGACATCCTGATTATTGCATCTCTGCTTACTCGTCTGTAGATGTGAAGCGAAGCAT GGAGGATGGTGAGAAACGCTTCAATGAGCTCTCTATTGAAGAACGGGGAAAGTTTGACGAAGAGACTCTAATTAATGTGAACAGCATTAAGAGGCAGAGC AGCAAAACCCAGAGAGCAAGTGGGTTTAGCAACGAATACATAGTGATAACAATCTTGGTGGCAGCAGAAGGGGTGCATAAGTTACCAACCATTAACAGCG TCGCAGACCTGAAGGAAGCTCTGCAAAAGCTTGGATCAATTTCCTCTGGCAGTACACTGGCAGTTGAGGTGCTGTGGACCCCACAAAATGAGGATGACAC GTTATCAGAGCGTGAACTTCTTCAAGATTACTCACTGTTAAGGCCATTATGA
AA sequence Show only first row Show all	>Lus10001794 pacid=23169678 polypeptide=Lus10001794 locus=Lus10001794.g ID=Lus10001794.BGIv1.0 annot-version=v1.0 MAATASFLHWNPLQWKHLPSPIPSSFPLRIPTTNKPSTINSTSRFTLRCSFQAKHLNADTEDKTILQRACDAALKALEKLKKPAITAVLIAALLMYDSAA ALAASGGRMGGKSFSRSSSSSSSRSYSVPRGSGPSFSYSAPYYGPSPFGGGGLFVGPAVGVGVGAGSGLVLILAGFAAFVLVSGFLSDRDEGGILAATEK TSVIKLQVGLLGMARSLQKDLNRIAEVADTSSSQGLSYVLTETSLALLRHPDYCISAYSSVDVKRSMEDGEKRFNELSIEERGKFDEETLINVNSIKRQS SKTQRASGFSNEYIVITILVAAEGVHKLPTINSVADLKEALQKLGSISSGSTLAVEVLWTPQNEDDTLSERELLQDYSLLRPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54520			unknown protein		Lus10001794 [exp]	0	1
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Lus10037216 [exp]	5.5	0.8407
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10000674 [exp]	12.9	0.8605
AT5G13720			Uncharacterised protein family...		Lus10029480 [exp]	16.1	0.8575
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10013482 [exp]	16.2	0.8456
AT2G41120			unknown protein		Lus10033361 [exp]	19.4	0.7975
AT1G23090		SULTR3;3, AST91	sulfate transporter 91 (.1)		Lus10034603 [exp]	19.9	0.8267
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10000518 [exp]	28.8	0.8445
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10007837 [exp]	29.1	0.8267
AT3G18770			Autophagy-related protein 13 (...		Lus10006790 [exp]	36.9	0.7748
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10013645 [exp]	37.3	0.7252

Compare expression of checked genes

Lus10001794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.