Plant FIBer expression Database

Lus10001795 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G23395 125 / 9e-37 MIA40 mitochondrial intermembrane space assembly machinery 40, Cox19-like CHCH family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G254600
[exp]
133 / 6e-40 AT5G23395 161 / 2e-51 mitochondrial intermembrane space assembly machinery 40, Cox19-like CHCH family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0351 CHCH PF06747 CHCH CHCH domain
Representative CDS sequence
>Lus10001795 pacid=23169677 polypeptide=Lus10001795 locus=Lus10001795.g ID=Lus10001795.BGIv1.0 annot-version=v1.0
ATGGGTCAAGCTCAAAGCGAGCCTTCAATTGGTATCGCGGAGGAAAAAGTTATCAAGCCTCAGGAATCTTCTCGTGCTACTTCCATGGAATCTCTTATAT
CAGAAGCTGCAGCATTTGGTGAATCCGTTGATGAGAGTGAGGTTTGTGCCCATCATTTTAAGTACGTAGGGAAAGAAATCTTGAGCAAATGTCTCGGCAT
TATGGACTATATGGTGAAGTTGAAGTTGGAGTTGTATTGTTTAATTTTGCAGTCTGTAGATTCCAAGGCTGAGAAGGCATTGGAGTGTCCTTGCATAAGC
GAGTTGCGAAATGGGGAATGTGGGACTCAATTTTCAGATGCCTTCCTTTGTTTCCTCAAGAGTACTTCTGAGGAGAAGGGATCAGATTGTGTCCACCCCT
TTGTTGCCCTGCAGAAGTGTATAAAGGTAAACCCAGGTGCATTTTCGAGGAAGGATGATGTTGCTGCGGTAGAAACACAAGTAGTAGAGGAGGTGAAGAA
AGAGGAAGTAGTGCAAGTGGGAGTTCAGAGATATAGAATGAGCGCCCCCCTTTGGGCTAGAGAACCTTCTACCCCAAAGCCAAAGCTCTGA
AA sequence
>Lus10001795 pacid=23169677 polypeptide=Lus10001795 locus=Lus10001795.g ID=Lus10001795.BGIv1.0 annot-version=v1.0
MGQAQSEPSIGIAEEKVIKPQESSRATSMESLISEAAAFGESVDESEVCAHHFKYVGKEILSKCLGIMDYMVKLKLELYCLILQSVDSKAEKALECPCIS
ELRNGECGTQFSDAFLCFLKSTSEEKGSDCVHPFVALQKCIKVNPGAFSRKDDVAAVETQVVEEVKKEEVVQVGVQRYRMSAPLWAREPSTPKPKL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G23395 MIA40 mitochondrial intermembrane sp... Lus10001795
[exp]
0 1
AT3G49870 ATARLA1C ADP-ribosylation factor-like A... Lus10025201
[exp]
2.4 0.8502
AT5G25760 PEX4, UBC21 ubiquitin-conjugating enzyme 2... Lus10011695
[exp]
4.9 0.7721
AT1G13870 DRL1, AtKTI12 DEFORMED ROOTS AND LEAVES 1, c... Lus10036884
[exp]
6.9 0.7925
AT2G39960 Microsomal signal peptidase 25... Lus10014838
[exp]
8.9 0.7814
AT1G64750 DSS1(I), ATDSS1... deletion of SUV3 suppressor 1(... Lus10030583
[exp]
9.4 0.8050
AT1G47820 unknown protein Lus10035088
[exp]
11.2 0.7827
AT1G11760 MED32 unknown protein Lus10034758
[exp]
18.0 0.7913
AT2G42680 MBF1A, ATMBF1A ARABIDOPSIS THALIANA MULTIPROT... Lus10000056
[exp]
21.7 0.8017
AT4G08460 Protein of unknown function (D... Lus10024758
[exp]
21.8 0.7635
AT2G33220 GRIM-19 protein (.1) Lus10035237
[exp]
24.0 0.7502

Lus10001795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.