Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13390 1288 / 0 NEF1 no exine formation 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002569 [exp] 1185 / 0 AT5G13390 1051 / 0.0 no exine formation 1 (.1) Lus10002568 [exp] 719 / 0 AT5G13390 647 / 0.0 no exine formation 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G068900 [exp] 1466 / 0 AT5G13390 1331 / 0.0 no exine formation 1 (.1) Potri.003G161400 [exp] 1427 / 0 AT5G13390 1340 / 0.0 no exine formation 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001797 pacid=23140351 polypeptide=Lus10001797 locus=Lus10001797.g ID=Lus10001797.BGIv1.0 annot-version=v1.0 ATGATACCGCCGGAGCTACAGCCTCGATCCTTCCGTCCTTACATAGCTTCCTCCCTCAGTGCCCCATCTTTGTCCTCCAACGACAATGGATCTCTCTACT CCCCTGATCGTACCGTCTCAGTCATTGCTGGCGCCAGTCCTAATTCTCAATTCCCATCCTCCTCCCCTTCATCCTCAAGATCCCGATTCTCCCCTTCATC CTTCTCTCATAACGCCAGAATAGCCGTCGCTCTGGTCCCTTGCGCCGCCTTCCTCCTAGATCTCGGCGGCGCTCCCGTCGTCGCTACCCTCACCCTCGGT CTCATGCTCTCTTACATCCTCGATTCCCTCAACCTCAAGTCTGGTGCCTTCTTTGGGGTCTGGCTCTCTCTCATCACCTCCCAGGTCGCATTCTTCTTTA CCTCATCCCTCATTTCTGCTTTCAATTCTATTCCTCTCGGCCTCCTCGCCTCCTTCCTTTGTGCTCAGGCCGATTTCCTTGTCGGCGTTTGGGCCTCCCT CCAGTTCAAGTGGATCCAGCTCGAGAACCCTAGCATCGTTCTCGCGCTCGAGCGCCTCTTGTTTGCCTGCGTTCCTTTCACTGCTTCCTCCATATTCGCT TGGGCCACTATCTCAGCTGTCGGTATGAACAACGCCTCCTTTTATCTCATGGCCTTTAACTGCGTCTTCTACTGGCTTTTCGCTATTCCCCGCGTTTCTT CCTTTAAGACCAAGCAGGAGATCAAGTATCATGGTGGTCAGGTCCCCGACGACAACTTCATTCTCTGCCCACTGGAGAGCTGTTTCCTTACTCTATACTT GCTATTCTTCCCTCTCTTGTTTCATGCTGCCTCCCATTACGCTGTCATGTTTTCATCTGTTGCTTCCTTCTGTGATTTGCTTCTGCTCTTCTTCATTCCT TTCTTGCTCCTACTCTATGCCTCCACCAAAGACGCACTTCGGTGGGTTACTAAGAGTCCGCGCCAGCTTCATAGCATTCGCGTAGTCAATGGCGCCGTGG CTTTGATCGTGGTCATAATTGCCTTGGAAGTCAGAGTTGTTTTCCATTCATTTGGGCGCTACATTCAGGTCCCACCTCCTTTGAATTATCTCCTTGTGAC CACAACAATGCTCGGAGGAGCGGCTGGAGCTGGTGCATATGCCTTGGGCATGGTTTCTGATGCTTTCAGCTCCTTGGTTTTCACTGCTTTGGCTGTTGTT GTCAGCTCTGCTGGAGCACTTGTTGTGGGATTTCCAATTGTGTTCCTTCCATTGCCATCAGTTACTGGCTTTTATCTGGCTCGATTTTTTACAAAGAAGA GCCTGCAGTCATACTTCGCTTTTGTTGTTCTTGGGAGCTTAATGGTATCTTGGTTTGTAATGCATAACTTCTGGGACCTCAATATATGGCTGGCTGGCAT GTCTTTAAAATCTTTTTGCAAGCTGATTGTTGCTAATGCTGTGCTTGCCATGGCGGTCCCTGGTTTAGCGCTTCTCCCTCAGAGTCTCAATTTGTTGGCT GAGGTGGGTTTGACCGGCCATGCATTGCTGCTGTGCTACATTGAGAACAGATTTTTCAATTACTCGGGGTTATACTACTACGGATTGGAGGATGATGTGA TGTATCCGAGCTATATGGTAATTGTTACGACATTCATAGGATTGGCCTTAGTTAGAAGGTTATCTGTTGACCGCCGAATTGGGTCAAAGGCAGTTTGGGT GTTAACTTGCTTGTACTCATCAAAGTTGGCCATGCTGTTCATATTATCAAAGACAGTTATATGGGTTTCAGCCATACTTCTACTTGCTGTTTCTCCCCCC CTGCTCCTTTACAAGGACAAGACCAGGACATCCTCTAAGATGAAACCATGGCAAGGCTATGCTCATTCTAGTGTGATTGCTCTATCAGTTTGGTTCTGCC GTGAAACAATTTTTGAAGCCCTTCAATGGTGGCATGGGAAGTCTCCATCAGATGGTTTGATTTTGGGCTTCTGCATTGTGTTGACAGGAGTAGCCTGCAT CCCGATTGTTGCTCTGCACTTCTCTCATATCCTGTCTACCAAGAGATGTCTGGTGCTTGTGTTGGCAACTGCCGCCGATTCCAGTGGCATGGATTTATGT TTCTGGTATAATATATGGACTTATCGTTCTGATATGATTAGGGCAGCCCGCCAATCTTCTGATGACATCTCTATCTATGGCTTTATTGCATCAAAACCTA CCTGGCCGTCATGGTTGCTCATTTTGGCAATATTGCTGACATTGGCTGCGGTGACATCTTTTATACCCATTAGGTACATTGTAGAGTTGAGAGCATTTTA TTCCATCGTAATGGGAATCACTTTAGGCATATATATATCCGCTGAGTACTTTCTCCAAGCTGCAGTTCTACATGTCCTTATTATTGGCACTATGGTCAGT ACCTCTGTCTTTGTGGTTTTCACTCATTTCCCATCGGCTTCAAGCACTAAGCTACTACCATGGGTATTTGCGTTACTTGTAGCCCTTTTCCCTGTAACTT ACCTAATGGAGGGTCAGGTAAGAATCAAAAGCTTTCTTGGAGATAGTGTTGTAGGAGACCTGGGAGAGGAAGATAGGAGGCTGACTACTTTACTGGCTGT TGAAGGTTCAAGGACTTCTTTGCTTGGGTTATATGCAGCAATTTTCATGCTAATAGCTTTGGAGATCAAATTTGAACTTGCATCACTTATGCGGGAGAAG TCACTTGAAAGGAGAGGAATTCGACATAGTCAATCTAGTGAAAGCAGTTCTGCTGGTATTGCCCCACGAATGAGGTTCATACAGCAGCGCAGAGTTTCTA CTGTGCCAACCTTCACGATAAAAAGGATGGCTGCTGAGGGTGCATGGATGCCTGCAGTAGGTAATGTTGCTACTGTTATGTGCTTTGCGATATGCCTCAT CTTGAATGTCAACCTAACTGGGGGATCCAACCAAGCAATATTCTTCCTGGCTCCCATTTTGCTACTTCTCAATCAGGACTCTGACTTTGTTGCTGGTTTT GGAGACAAACAAAGGTATTTCCCTGTTACAGTTGCTATATCGGCTTATTTGGTGCTGACTACCTTATGCAACATCTGGGAAGATGTCTGGCATGGGAATG CTGGATGGAGCATTGAAATTGGTGGTCCTGATTGGTTCTTTGCTGTGAAAAATGTGGCACTTCTGATACTTACATTTCCGAGCCACATCCTTTTTAATCG TTTTGTGTGGAGTTACACAAAACAGGCAGATACAACGCCTCTAATAACCTTGCCGCTTAATCTGCCGTCCGTAATAATAGCGGATGTGATGAAGATTAAG ATATTGGGTATTTTGGGAATTATTTATACGATAGCGCAGTCAATAGTTTCTAGACAGCAACATATCTCTGGACTGAAGTATATTTAG
AA sequence Show only first row Show all	>Lus10001797 pacid=23140351 polypeptide=Lus10001797 locus=Lus10001797.g ID=Lus10001797.BGIv1.0 annot-version=v1.0 MIPPELQPRSFRPYIASSLSAPSLSSNDNGSLYSPDRTVSVIAGASPNSQFPSSSPSSSRSRFSPSSFSHNARIAVALVPCAAFLLDLGGAPVVATLTLG LMLSYILDSLNLKSGAFFGVWLSLITSQVAFFFTSSLISAFNSIPLGLLASFLCAQADFLVGVWASLQFKWIQLENPSIVLALERLLFACVPFTASSIFA WATISAVGMNNASFYLMAFNCVFYWLFAIPRVSSFKTKQEIKYHGGQVPDDNFILCPLESCFLTLYLLFFPLLFHAASHYAVMFSSVASFCDLLLLFFIP FLLLLYASTKDALRWVTKSPRQLHSIRVVNGAVALIVVIIALEVRVVFHSFGRYIQVPPPLNYLLVTTTMLGGAAGAGAYALGMVSDAFSSLVFTALAVV VSSAGALVVGFPIVFLPLPSVTGFYLARFFTKKSLQSYFAFVVLGSLMVSWFVMHNFWDLNIWLAGMSLKSFCKLIVANAVLAMAVPGLALLPQSLNLLA EVGLTGHALLLCYIENRFFNYSGLYYYGLEDDVMYPSYMVIVTTFIGLALVRRLSVDRRIGSKAVWVLTCLYSSKLAMLFILSKTVIWVSAILLLAVSPP LLLYKDKTRTSSKMKPWQGYAHSSVIALSVWFCRETIFEALQWWHGKSPSDGLILGFCIVLTGVACIPIVALHFSHILSTKRCLVLVLATAADSSGMDLC FWYNIWTYRSDMIRAARQSSDDISIYGFIASKPTWPSWLLILAILLTLAAVTSFIPIRYIVELRAFYSIVMGITLGIYISAEYFLQAAVLHVLIIGTMVS TSVFVVFTHFPSASSTKLLPWVFALLVALFPVTYLMEGQVRIKSFLGDSVVGDLGEEDRRLTTLLAVEGSRTSLLGLYAAIFMLIALEIKFELASLMREK SLERRGIRHSQSSESSSAGIAPRMRFIQQRRVSTVPTFTIKRMAAEGAWMPAVGNVATVMCFAICLILNVNLTGGSNQAIFFLAPILLLLNQDSDFVAGF GDKQRYFPVTVAISAYLVLTTLCNIWEDVWHGNAGWSIEIGGPDWFFAVKNVALLILTFPSHILFNRFVWSYTKQADTTPLITLPLNLPSVIIADVMKIK ILGILGIIYTIAQSIVSRQQHISGLKYI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10001797 [exp]	0	1
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10002568 [exp]	1.0	0.9590
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10000808 [exp]	3.0	0.9217
AT3G19870			unknown protein		Lus10030556 [exp]	3.5	0.9160
AT1G34130		STT3B	staurosporin and temperature s...		Lus10017990 [exp]	4.0	0.9299
AT5G38880			unknown protein		Lus10005085 [exp]	4.9	0.8977
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10026336 [exp]	7.4	0.9159
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10002569 [exp]	8.4	0.8963
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10040268 [exp]	9.2	0.8986
AT1G73240			unknown protein		Lus10042457 [exp]	9.9	0.8956
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10015337 [exp]	10.2	0.8913

Compare expression of checked genes

Lus10001797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.