Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13960 440 / 2e-147 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT2G22740 228 / 7e-65 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT1G73100 208 / 1e-58 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT5G04940 182 / 2e-49 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT4G13460 170 / 5e-45 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G33290 169 / 1e-44 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT1G17770 168 / 3e-44 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G35160 151 / 4e-38 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT2G24740 122 / 7e-29 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT2G23740 111 / 4e-25 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002571 [exp] 905 / 0 AT5G13960 444 / 1e-149 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10031984 [exp] 462 / 1e-154 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10041515 [exp] 454 / 5e-152 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10035115 [exp] 444 / 2e-147 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10040150 [exp] 237 / 3e-68 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 224 / 2e-62 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011011 [exp] 223 / 2e-62 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10008681 [exp] 201 / 5e-56 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10026137 [exp] 186 / 1e-50 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G162801 [exp] 530 / 2e-180 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.002G237950 [exp] 477 / 6e-161 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.014G143900 [exp] 441 / 1e-146 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G083100 [exp] 262 / 2e-76 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.006G027600 [exp] 204 / 6e-57 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.016G025300 [exp] 198 / 6e-55 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.003G188700 [exp] 194 / 1e-53 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.001G036800 [exp] 191 / 2e-52 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.008G173100 [exp] 174 / 4e-46 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.010G064300 [exp] 164 / 5e-43 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif PF00856 [flax] [poplar] SET SET domain CL0178 [flax] [poplar] PUA PF02182 [flax] [poplar] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Lus10001798 pacid=23140353 polypeptide=Lus10001798 locus=Lus10001798.g ID=Lus10001798.BGIv1.0 annot-version=v1.0 ATGTCAGATGTGGGTTTCAATCTTGTTGGTGGTGTACGAGGGGCTGTTTCAAAGCGCAGATTTAGCCCAAGACTTAGGGATATCTTGAAGCTGAAGAGAC CAGGCAACCGAGGCAAAGTAGCTCCAAGATTCTACGGACAGCTTGGCTACCTTCACAACCAGAGAGTACGGAGAATGAGCAATGCTAATAGAGATGCAAA ATGTGTTGATATTGGGAACATAATTGACCTAGAAGACAACAATCAAGTGAAATGGACTGCCTATGATAGTTTTGTTGCTGATACTCTAAAAGAGACAGAA GCTACGAGAAGGTCTAATGACTCCTACCTTGATTTTGTTCAGATACCGATCACAAAGGAAAATCTGTATCCCAAAGTGAAACTTGGTCTTCTACCCGGCA TTGTTACCGGACATAGATTCTTCTCCCGAGCTGAAATGGTGGCGATAGGTTTCGAGCTATGTTGGCTGACTGGAATTGATTACTTAAGAAAGTATTCTAA AAGACTGATGCAAAACAATACTACACCTTATTTGGCAGTGGCAGTCGTGCTATCTTGCACATCAAGAGGTGATGTTGACAGTAAACATGAAGTCGTTTAT ATTCACCAAGATGGCACTAAGTTGTCTTGTAATACGCAGCAAGAGGAAAATAAATACATGTTGGGTGCTAGTTTGGCTTTGAAGAACAACATGCATAAAT GCATACCAGTTAGACTCATTGGTGGACACAAATCTTCCGGTAACAATGGTTCGAAAGAGTATACATACTGTGGATTGTACAAGATTCCTAGTGAAAGAGG AAGGCAGTCTACAATTTCTATTAAATTGCCAGGCTTGGTGTCTGAAGATATATCTTATGGTGAAGAAGCACTGTCTATTGCTGTTACGAATACAGTTGAC TCACCACCTATTGCACCTTCAGGCAAGTTCACTTATCGGTTGAAACTTTATTTGGCAGAGGCTTGTAGAAGGCTTTTACCCTTTTCAGATGATTTTGCTT ATTTCAAGTACTGCAAGTCCATTCAAGTTGCAACTGGTGTAATCATTCCTCCATCTGCCTCTGGATGCAAATGCAATGGAAGTTGTACAAATCCAAAGAC TTGCTCTTGTGCTCAACTTAATGGTTTTGACTTCCCGTACGCAAATCAAGACGGTGGCAGATTGATTGAAGCGAAAGACATAGTATATGAATGCGGCCCA GGATGTAGCTGTGGGTCTAAATGCACTAATCGTGTATCTCAGCGAGGGTTAAAATACCAACTTGAGATATATCGCACAAATAGAAAAGGGTGGGCTGTTA GGTCCTGGGACCCCATACCTGCTGGTGCTCCAGTTTGTGAATATACTGGACTTCTCGGGAGGAGTGCAGAATTGGATAGCGTCTGCGACAATGACTACAT ATTTGACATTGATTGCTTGCACACCATGCACGGGATAGGGGGAAGAGAGGTAGTGTACTTGTCATTTCTGATGTTCTACGTTAGAGAGCGTCATGTTTCC TCGTTTAATACTTTGCGGAAGCGAGAAGTCGGTGTATCTGTAACAAGTTCTACTCCAGGAAAAGTAGATGCAACATCATTTCCAGAAAGCGAGTCTGAGT TTTGTATAGATGCAGGTTCCTGCGGTAATGTTGCTAGATTCATCAATCACAGCTGTGAGCCTAACCTATTTGTTCAATGCATTTTGAGCTCACACCATGA TCTCAGACTGGCTCGGATAGTGTTGTTTGCAGCAGAAGATATTCCTCCCATGGATGAACTTACATATGACTATGTTTACGAGCTGGGCAGTGTAATTGAT GGAGATGGTAATGTAAAGGAGCTGGAATGCCATTGTGGAACAAGCGAATGTCGGGGCCGTTTATACTGA
AA sequence Show only first row Show all	>Lus10001798 pacid=23140353 polypeptide=Lus10001798 locus=Lus10001798.g ID=Lus10001798.BGIv1.0 annot-version=v1.0 MSDVGFNLVGGVRGAVSKRRFSPRLRDILKLKRPGNRGKVAPRFYGQLGYLHNQRVRRMSNANRDAKCVDIGNIIDLEDNNQVKWTAYDSFVADTLKETE ATRRSNDSYLDFVQIPITKENLYPKVKLGLLPGIVTGHRFFSRAEMVAIGFELCWLTGIDYLRKYSKRLMQNNTTPYLAVAVVLSCTSRGDVDSKHEVVY IHQDGTKLSCNTQQEENKYMLGASLALKNNMHKCIPVRLIGGHKSSGNNGSKEYTYCGLYKIPSERGRQSTISIKLPGLVSEDISYGEEALSIAVTNTVD SPPIAPSGKFTYRLKLYLAEACRRLLPFSDDFAYFKYCKSIQVATGVIIPPSASGCKCNGSCTNPKTCSCAQLNGFDFPYANQDGGRLIEAKDIVYECGP GCSCGSKCTNRVSQRGLKYQLEIYRTNRKGWAVRSWDPIPAGAPVCEYTGLLGRSAELDSVCDNDYIFDIDCLHTMHGIGGREVVYLSFLMFYVRERHVS SFNTLRKREVGVSVTSSTPGKVDATSFPESESEFCIDAGSCGNVARFINHSCEPNLFVQCILSSHHDLRLARIVLFAAEDIPPMDELTYDYVYELGSVID GDGNVKELECHCGTSECRGRLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10001798 [exp]	0	1
AT5G14020			Endosomal targeting BRO1-like ...		Lus10041527 [exp]	4.7	0.8445
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001019 [exp]	8.1	0.8228
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10026917 [exp]	11.2	0.8303
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Lus10008459 [exp]	11.8	0.8022
AT1G24160			unknown protein		Lus10002952 [exp]	12.8	0.8016
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10043468 [exp]	15.0	0.8235
AT2G03350			Protein of unknown function, D...		Lus10037126 [exp]	15.4	0.8322
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021938 [exp]	16.0	0.8289
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Lus10013886 [exp]	19.1	0.8226
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Lus10017430 [exp]	23.0	0.8038

Compare expression of checked genes

Lus10001798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.