Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13300 1108 / 0 AGD3, VAN3, SFC ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) AT5G61980 945 / 0 AGD1 ARF-GAP domain 1 (.1) AT1G60860 620 / 0 AGD2 ARF-GAP domain 2 (.1) AT1G10870 616 / 0 AGD4 ARF-GAP domain 4 (.1) AT5G54310 102 / 1e-22 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 97 / 2e-22 AGD15 ARF-GAP domain 15 (.1) AT4G21160 96 / 3e-21 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT4G05330 89 / 7e-19 AGD13 ARF-GAP domain 13 (.1) AT3G07940 87 / 4e-18 Calcium-dependent ARF-type GTPase activating protein family (.1) AT5G66055 75 / 8e-14 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002572 [exp] 1389 / 0 AT5G13300 1149 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10016724 [exp] 886 / 0 AT5G61980 1060 / 0.0 ARF-GAP domain 1 (.1) Lus10036018 [exp] 853 / 0 AT5G61980 1009 / 0.0 ARF-GAP domain 1 (.1) Lus10030568 [exp] 597 / 0 AT1G60860 925 / 0.0 ARF-GAP domain 2 (.1) Lus10030921 [exp] 320 / 5e-98 AT1G60860 608 / 0.0 ARF-GAP domain 2 (.1) Lus10027249 [exp] 98 / 2e-22 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10018445 [exp] 100 / 5e-22 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1) Lus10011238 [exp] 100 / 8e-22 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1) Lus10038582 [exp] 100 / 9e-22 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G163200 [exp] 1241 / 0 AT5G13300 1146 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.001G066800 [exp] 1221 / 0 AT5G13300 1192 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.015G105500 [exp] 950 / 0 AT5G61980 1110 / 0.0 ARF-GAP domain 1 (.1) Potri.012G036900 [exp] 100 / 1e-23 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.011G127000 [exp] 104 / 3e-23 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 104 / 5e-23 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.004G035800 [exp] 102 / 2e-22 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 102 / 2e-22 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G372000 [exp] 89 / 5e-19 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.011G098500 [exp] 89 / 5e-19 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0145 [flax] [poplar] Golgi-transport PF03114 [flax] [poplar] BAR BAR domain CL0145 [flax] [poplar] PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10001799 pacid=23140349 polypeptide=Lus10001799 locus=Lus10001799.g ID=Lus10001799.BGIv1.0 annot-version=v1.0 ATGCAGATTTTATCCTTGGAGGACAGCGCTGAATCATTGAGGGAAAGATCCTTAAAGTTCTACAAAGGATGTCGAAAATACACTGAAGGACTTGGGGAGG GATATGATGGCGACATTGCTTTTGCTAGTGCACTGGAATCTTTTGGGGGAGGACACAATGATCCCATCAGTGTGGCTTTTGGAGGCCCCGTTATGACGAA GTTTACTATAGCATTGAGAGAAATTGGCACTTACAAAGAAGTTCTTAGGTCCCAGGTGGAGCACATGCTAAATGGCAGGCTACTGCAGTTCGTGAATGTT GATTTACATGAAGTGAAGGAAGCGAGGAAGTGTTTTGATAAGGCCAGCCTTATCTACGATCAGGCACGTGAGAAGTTTCTAGCACTAAGAAAAGGCACGA AGACTGATGTAGCCAGTGTCTTGGAGGAGGAGCTCCATAATGCTAGGTCCGGTTTCGAGCAAACCCGCTTTAATCTAATAACGACCCTTTCCAATATTGA AGCAAAAAAGAGATTTGAGTTTCTGGAAGCTGTTAGTGGCACAATGGATGCACATCTTCGCTACTTCAAACAAGGGTATGAATTACTGCACCAAATGGAG CCATATATAAACCAGGTTTTGACTTATGCTCAACAATCAAGAGAGAGGTCCAATTATGAGCAAGCTTCCTTGAATGAAAAGATGCAAGAATACAAGAGAC AGGTGGATCGTGATAGTAGACTGTCCTCTAATGGCTCCAATGGATCCCCCAATGGTGATGGTATACATGCCATTGGTAGAAGTTCACATAAAATGATAGA GGCAATTATGCAATCTGCTTCAAGGGGAAAGGTACAAACCATCCGGCAAGGTTATTTATCAAAACGTTCGTCAAACTTGAGAGGAGACTGGAAAAGAAGA TTTTTCGTTCTTGATAGCCGAGGCATGTTGTATTACTATCGCAAACAGTGTGTCAAACCTTCTAGTTCTCGAAGTCAGCTTAATGGTCAGAGAAACAGCT CAGAGCTTGGATCTGGATTATTGAGCCGTTGGCTTTCTTCTAACCATCAAGGAGGAGTTCATGATGAAAAATCGGTTGCTCATCATACTGTTAACCTTCT TACATCGACAATCAAAGTTGACGCGGATCAGTCAGATCTACGATTTTGCTTCAGGATCATATCACCAACGAAGAACTACACTTTGCAGGCAGAGAGTACA CTGGATCAAATGGATTGGATTGAGAAGATAACTGGAGTCATTTCGTCGCTGCTGAGCTCGCAAGCTCCTGATCAGTGTTTTCCTGCTAGTCCAATTGGAA GTGGTCATCATCGCTCAGCAAGTGATAGCAGTTCATATGAAAGTACCGATTTTGACCACCCTGTGGTCGATGAATATTCATGTGAGAGAAGCCATTCTGG TGCTCAGTTTGAACGACATCTGAGAAGTTCACAGCAGCCAATTGATTTGTTGCGAAGGGTCTGTGGAAACGAGAGATGTGCTGATTGTGGTGCGCCTGAA CCAGATTGGGCTTCCCTAAATCTTGGAATCCTTGTGTGTATCGAGTGTTCAGGTGTTCATCGAAACCTTGGTGTACACATATCTAAGGTAAGGTCTCTTA CACTTGATGTTAAAGTGTGGGAACCTTCTGTTATAAGTTTGTTTCAATCTCTGGGAAATGCGTTTTCAAACTCAGTTTGGGAGGAGTTACTGCAATCAAG AGGTTGCTTCCAGGCTGATGTCATATCTTCAGGCTCATACAAATCTGCTAAACCGCAACTGTTTTTCCTTGGGAAGCCCAATCCTGCTGATTCTATATCC GTGAAGGAGAAGTTTATCCATGCCAAGTATGCGGAAAAGCTTTTTATTCGGAAACCAAGGGAGAACCAGTGTTCTCAATCAGTGGCTCAACAGATGTGGG AAAGTGTCCGTGCCAACGACAAGAAGGGTTTATATCGTCTTATTGTTAATCATGAAGTTGATGTGAATATCATCTATGACTTGGCAACGGTTAGCTCTTC CCTAACACTTGCTAAAGCGATGCTATTACAAGAGCAAACGGGTGCAAGGAATTCAATGGATAGGTCCTCCGGTGATCAAGATGGTTGCACTCTGTTTCAT CTGGCTTGCGAAACTGCTGACATTGGGATGCTTGAACTTCTCCTACAATATGGGGCGGATGTAAATTCAAGGGATTCAAAAGGTCAGACACCGCTCCATT GTTGTACTATGAGAGGGAGAGCTTCTTTCTCAAAACTACTCCTGTCGAGGGGGGCGAATCGTGGGGCCGTCAATGGGGAAGGAAAAACTCCTCTGGAGGT GGGAGTGGAGTGCAATGTAGTTGAGAATGAGATATTAGGGATATTACCCGACTCAAATGGATGA
AA sequence Show only first row Show all	>Lus10001799 pacid=23140349 polypeptide=Lus10001799 locus=Lus10001799.g ID=Lus10001799.BGIv1.0 annot-version=v1.0 MQILSLEDSAESLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALESFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNGRLLQFVNV DLHEVKEARKCFDKASLIYDQAREKFLALRKGTKTDVASVLEEELHNARSGFEQTRFNLITTLSNIEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQME PYINQVLTYAQQSRERSNYEQASLNEKMQEYKRQVDRDSRLSSNGSNGSPNGDGIHAIGRSSHKMIEAIMQSASRGKVQTIRQGYLSKRSSNLRGDWKRR FFVLDSRGMLYYYRKQCVKPSSSRSQLNGQRNSSELGSGLLSRWLSSNHQGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAEST LDQMDWIEKITGVISSLLSSQAPDQCFPASPIGSGHHRSASDSSSYESTDFDHPVVDEYSCERSHSGAQFERHLRSSQQPIDLLRRVCGNERCADCGAPE PDWASLNLGILVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNAFSNSVWEELLQSRGCFQADVISSGSYKSAKPQLFFLGKPNPADSIS VKEKFIHAKYAEKLFIRKPRENQCSQSVAQQMWESVRANDKKGLYRLIVNHEVDVNIIYDLATVSSSLTLAKAMLLQEQTGARNSMDRSSGDQDGCTLFH LACETADIGMLELLLQYGADVNSRDSKGQTPLHCCTMRGRASFSKLLLSRGANRGAVNGEGKTPLEVGVECNVVENEILGILPDSNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Lus10001799 [exp]	0	1
AT2G37050			Leucine-rich repeat protein ki...		Lus10019907 [exp]	1.7	0.8264
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Lus10002572 [exp]	6.6	0.8082
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10001056 [exp]	8.5	0.7904
AT2G38890			unknown protein		Lus10023488 [exp]	11.0	0.7368
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10003917 [exp]	11.4	0.7526
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10042478 [exp]	11.7	0.7873
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10001967 [exp]	15.4	0.7231
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10020750 [exp]	15.7	0.7504
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Lus10006193 [exp]	21.0	0.7268
AT1G06490		CalS7, ATGSL7, ...	callose synthase 7, Arabidopsi...		Lus10001424 [exp]	21.5	0.7507

Compare expression of checked genes

Lus10001799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.