Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28100 201 / 3e-63 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002573 [exp] 453 / 1e-161 AT1G28100 311 / 5e-106 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G163800 [exp] 239 / 6e-78 AT1G28100 362 / 1e-126 unknown protein Potri.001G066000 [exp] 228 / 1e-73 AT1G28100 362 / 1e-126 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001800 pacid=23140346 polypeptide=Lus10001800 locus=Lus10001800.g ID=Lus10001800.BGIv1.0 annot-version=v1.0 ATGGAAGAAGGAAATTCCTCTGGTGGTCGTCCATCCTCCGGATATGGGAAGCCTCCTTGGATTTTCAAAGGCAGGCATGTATTCTTTATTAACTTTTGCG TCGACTCCACTTCTTCTCATACTTCTCTACTTTCCTTCCTTTTCTCTTTCATTTGTCGTTTGAACCAACGATTTTATCCCAATTTCAGTGCCTTATACCA GCTTCATCTTGTTAAGGCGGACATCGCTCGAGCATTTGTACCGAAGAACTTGAGACTAGTTGAAGCTTTTGGATACACTTTGGGTGGGTTCTTCCTCGCA AACTATGAAGATAGCCCTGCTGGGTCTTTCGATGAGGAAGTGGGTCTTCCAAGTCACGTTGCCAAGTTCTCAAAGGTAGTATTATGTCTGTATACTCCAA TTAGAGAGGTGAGGACAATGGCAGTTCCAGTGAACCAAAAGAGTAGAGACAGTAGTTTCCTAAACTTGATTGGCTTAGGTGCATCAGTTTCTATGCCAAC AGATTGCTCGGATGTTCAAGTCACTGAAGTGATAGGTCATTCCAGAACTAATATTTGTAATATGAACCTCGCCACTCTTGTTCCAGGGATGAAGCTGGGC CAGTGGACAAGGCCAACGATGAGATTATCCTTACCAAGTTTCAGCGGCCGAACGGAGTACAATCCAGACCTTTTGAAGTATAGTTGCGACCTTAAATGCA AGATAAGGGCAGTGCAGCCAGCTATAGCATCATCCATAAGAAAGCAAGATTTGGAAGAAGCCGAAGACTCTGGTACCACAGCAAATAAGAAGGCCAATCT AACTCTATCCATTCTATTATCAAAGCCCCTTCTAGCTTTGGAATTCAGCTCACTGGAAATGAAAGTTGGGGCCCCTATAGTTGTCTCCGACTTATCTAAT AAAAATAACTCTTGTGGAACGTCGTTAGGAGTTGCTTGA
AA sequence Show only first row Show all	>Lus10001800 pacid=23140346 polypeptide=Lus10001800 locus=Lus10001800.g ID=Lus10001800.BGIv1.0 annot-version=v1.0 MEEGNSSGGRPSSGYGKPPWIFKGRHVFFINFCVDSTSSHTSLLSFLFSFICRLNQRFYPNFSALYQLHLVKADIARAFVPKNLRLVEAFGYTLGGFFLA NYEDSPAGSFDEEVGLPSHVAKFSKVVLCLYTPIREVRTMAVPVNQKSRDSSFLNLIGLGASVSMPTDCSDVQVTEVIGHSRTNICNMNLATLVPGMKLG QWTRPTMRLSLPSFSGRTEYNPDLLKYSCDLKCKIRAVQPAIASSIRKQDLEEAEDSGTTANKKANLTLSILLSKPLLALEFSSLEMKVGAPIVVSDLSN KNNSCGTSLGVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28100			unknown protein		Lus10001800 [exp]	0	1
AT1G30130			unknown protein		Lus10028119 [exp]	2.0	0.7930
AT2G02410			unknown protein		Lus10042400 [exp]	3.6	0.8256
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Lus10028252 [exp]	4.1	0.7413
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10037926 [exp]	7.9	0.7492
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10034522 [exp]	8.4	0.8123
AT1G28100			unknown protein		Lus10002573 [exp]	8.8	0.8033
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10002374 [exp]	9.2	0.7807
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038308 [exp]	10.2	0.7414
AT1G17665			unknown protein		Lus10006153 [exp]	11.2	0.7286
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Lus10040910 [exp]	13.6	0.7552

Compare expression of checked genes

Lus10001800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.