Plant FIBer expression Database

Lus10001801 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13260 526 / 0 unknown protein
AT3G48860 481 / 3e-165 unknown protein
AT5G23700 400 / 8e-134 unknown protein
AT4G25070 386 / 1e-125 unknown protein
AT4G08630 340 / 2e-107 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002574
[exp]
773 / 0 AT5G13260 566 / 0.0 unknown protein
Lus10036015
[exp]
495 / 7e-171 AT3G48860 675 / 0.0 unknown protein
Lus10043194
[exp]
486 / 2e-167 AT3G48860 684 / 0.0 unknown protein
Lus10032546
[exp]
480 / 6e-166 AT3G48860 595 / 0.0 unknown protein
Lus10016721
[exp]
481 / 2e-165 AT3G48860 674 / 0.0 unknown protein
Lus10001720
[exp]
299 / 1e-92 AT4G08630 471 / 5e-155 unknown protein
Lus10004138
[exp]
277 / 2e-84 AT4G08630 464 / 2e-152 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G164100
[exp]
656 / 0 AT5G13260 529 / 0.0 unknown protein
Potri.001G065800
[exp]
619 / 0 AT3G48860 528 / 0.0 unknown protein
Potri.012G105400
[exp]
512 / 1e-177 AT3G48860 546 / 0.0 unknown protein
Potri.015G104600
[exp]
441 / 2e-149 AT3G48860 452 / 3e-153 unknown protein
Potri.005G044600
[exp]
400 / 8e-132 AT4G08630 436 / 5e-142 unknown protein
PFAM info
Representative CDS sequence
>Lus10001801 pacid=23140348 polypeptide=Lus10001801 locus=Lus10001801.g ID=Lus10001801.BGIv1.0 annot-version=v1.0
ATGAACAGTAGGAGCAGGACTCAGAGTCCCGTCTACGCCAGGCAATGGGGCTCCGACTCTTCTGCAGCGGCAATGGCTACAGCTACAACTCCATCAATGT
CACCAGCTCATCACCACGCCCGCTCCTCCTCTGCTAGTGGCCTCTCCGCCATCAAGCGCAACCAGAACTATGCCGCCAAGGCTGCTGCCCAGCGCCTTGC
TCAGGTCATGGCTTCCCAAGCTGCTGATGACGATGACGAAGACAACCCTGACGATCTGGGTTTTCGTTACAGTGCTCCTCCTCCTTTATCTCTTTCCCGC
ACTGCTGCTCCCAGGATCGCCAGATCCCCTTCCCCTGCTGCTACTATACCGCGGAAATTGGCCGAAGAAACTCCCTCGGTTCGATCAACATCCACCGGAA
GGCCAGCGATGTCTTATCGAGCAGCAGCACCAGATCCAACTGCTAAAGGGTCTTTGAGAACCGCAGTCTCCTTACCACCTCTTGAGCCACCTAAAAATGG
GTTCAGGGACGGAAAGAGATTCCCATCTGATGAAGGATATCCGAACTCGAAAGATTATGGAGATTATCATGAGGCTTCTGCACTTTGTGATGAACTTGAT
ATGCTACAAGAAGATAATGACAGCATGGTCGAGAAGCTTAGGCTTGAGGAGGAAAGGTGTCAAGAAGCAGAGGACAGAGTCAGGGACCTTGAGAAGCAGG
TTGCTTCTCTCGGGGAGGGAGTATCTCTGGAAGCAAAATTGTTGAGCAGGAAGGACGCTGCATTGCGTCAAAGAGAAGCTGCTCTTAAAGATGCCAAGCA
GGATTCGGTGGATAAGGAAACTGCTTCTGTAAGGTCTGATGTACAATATGCTAAAGACGAGGCTTCAGTTGTACTGAGACAATTGCATGGAGCTGAATCT
GAACTTAATGCCCTTCGTTCAATGACACAAAGAATGGTTTTAACCCAGAAAGAAATGGAAGAAGTTGTTCTTAAGAGGTGTTGGCTGGCTCGTTACTGGG
GCTTATCTGCAAAATACGGTATCTGTTCGGATGTTGCTGTGCCAAAGCATGAATACTGGTCATCATTGGCACCTCTTCCGTTTGAAGTTGTTCTTTCCGC
TGGACAAAAAGCTAAAGAGGAACGTTGGGAAGAAGGTGATGCTGGTGGCAAGGAGAGGAGAAACAAACTTGCACAGGATTTGAACGATCTAACTAGTGAA
GGGAATATCGAGAGCATGCTGTCGGTAGAAATGGGCTTGAAAGAGCTTGCTTCCCTCAAGGTCGATGAAGCTATTGTTCTTGCACTGGCACAGCAGCGGA
GTGCAAACTCTGCCCGGCAGTCAATCTCAGAGCTCAAATCACCCGGTGATCCAAAATACAGGGAGGCATTCGAACTTAGTCCGGAGGAGTGTGAAGATGT
CCTATTCAAGGAGGCTTGGCTAACGTACTTCTGGGGAAGAGCTAAAGCAAATGGTGTGGAGGAGGAAATCGCAACAGAGCGACTTCGGTTTTGGATCAAC
CGTAGCAGGCACTCACCCAGTTCGCATGATTCTGTTGATGTGGAACAAGGTCTAATGGAGCTGAGGAAGTTGGGGTTAGAGCATCGGCTGTGGGAAGCAT
CACGGAGAGGATTAGAGGAATAA
AA sequence
>Lus10001801 pacid=23140348 polypeptide=Lus10001801 locus=Lus10001801.g ID=Lus10001801.BGIv1.0 annot-version=v1.0
MNSRSRTQSPVYARQWGSDSSAAAMATATTPSMSPAHHHARSSSASGLSAIKRNQNYAAKAAAQRLAQVMASQAADDDDEDNPDDLGFRYSAPPPLSLSR
TAAPRIARSPSPAATIPRKLAEETPSVRSTSTGRPAMSYRAAAPDPTAKGSLRTAVSLPPLEPPKNGFRDGKRFPSDEGYPNSKDYGDYHEASALCDELD
MLQEDNDSMVEKLRLEEERCQEAEDRVRDLEKQVASLGEGVSLEAKLLSRKDAALRQREAALKDAKQDSVDKETASVRSDVQYAKDEASVVLRQLHGAES
ELNALRSMTQRMVLTQKEMEEVVLKRCWLARYWGLSAKYGICSDVAVPKHEYWSSLAPLPFEVVLSAGQKAKEERWEEGDAGGKERRNKLAQDLNDLTSE
GNIESMLSVEMGLKELASLKVDEAIVLALAQQRSANSARQSISELKSPGDPKYREAFELSPEECEDVLFKEAWLTYFWGRAKANGVEEEIATERLRFWIN
RSRHSPSSHDSVDVEQGLMELRKLGLEHRLWEASRRGLEE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G13260 unknown protein Lus10001801
[exp]
0 1
AT1G10760 GWD1, GWD, SOP1... STARCH EXCESS 1, Pyruvate phos... Lus10013044
[exp]
1.0 0.8985
AT5G13260 unknown protein Lus10002574
[exp]
1.4 0.8763
AT4G01810 Sec23/Sec24 protein transport ... Lus10007190
[exp]
4.2 0.8753
AT5G64860 DPE1 disproportionating enzyme (.1) Lus10036628
[exp]
4.9 0.8471
AT1G45207 Remorin family protein (.2) Lus10009750
[exp]
5.3 0.8685
AT2G38580 Mitochondrial ATP synthase D c... Lus10025211
[exp]
5.7 0.8263
AT4G15240 Protein of unknown function (D... Lus10027152
[exp]
7.7 0.8490
AT2G03060 MADS AGL30 AGAMOUS-like 30 (.1.2) Lus10030450
[exp]
9.0 0.8495
AT2G26100 Galactosyltransferase family p... Lus10014451
[exp]
13.2 0.8530
AT2G26100 Galactosyltransferase family p... Lus10023955
[exp]
14.1 0.8680

Lus10001801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.