Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13250 63 / 7e-11 RING finger protein (.1) AT1G28080 62 / 7e-11 RING finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002575 [exp] 333 / 5e-113 AT5G13250 90 / 9e-20 RING finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G062700 [exp] 73 / 4e-14 AT5G13250 202 / 2e-61 RING finger protein (.1) Potri.003G164800 [exp] 68 / 1e-12 AT5G13250 218 / 1e-67 RING finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001802 pacid=23140355 polypeptide=Lus10001802 locus=Lus10001802.g ID=Lus10001802.BGIv1.0 annot-version=v1.0 ATGCTCCCTACTCCCTTGTCTACCACTCCAATCTCCAAACCACAGCACATCACTGGCCGCATTCGTCTTCGGGGTACTACACAAAGTAGCGTTTCGTCAA AGGGTTTGGCGCCGTTAGATGATCAATGCCCCGGAGGTTGCTTAATATTTCAAGAAAAACCGGGTTATTATTACAACAGTAGTAGTAGTAGTAGTGAGAT TGATATGGAATTAGTGGGAGCCGATGGTGGTAACAACAGCAGCAGCAGCAACCAGCTCAATAATAACAACGACAATGAAGAAGAAGAAGAAGAAGAGGAG GAGGAGGAAGAAGGTGAAGTAGTGGGGTCCACTAATGATGAACAAGAAGGAGCATCAGCTTCTTGTTCCGATACCTGGTTGCAGTTGAGTATCGGCGGCC AATTAACTACCCACCAGCGGCGACGGCCGGATCTGATAGAGCTTGATCTGCTTGCCGGCGGAAGCACTACTAGTACTAGTTGGCCCCTTCCTCCTCCTCC TTTTCTTCCACAAGGTTTTGTGGGTGTGGCACCTATTCCTCCTCAGCCCCCAGGCTTATTTTTGCAGCAGCAGCAGCAGGGTCCCACCTCCTCACTACTC CAGCTGACCACCGGAGCTGCTGCTGCTGATTCTGTCGGAGGAGTCTTGTTTACCTCGACTCCGTCGGATAATATTATTAATTACTGGCCCTCTTACATGA GGCCTCCGGGAGTAGTGACTTGTACTGAAGCACCATCACCGATGCATCAATATCATCATCATCATCGTCATCCTAATTATCTTGAGAATTATTCAATGGT GGGGGTGGGTCCTAATTATTATTCCAGCAGGCCCTTTCAATTCCAATATAATTCCAGTAGCGGCGGCAGATCAGATCCTAATGACAACTCCGACTTTAGA GTAATTGATCCCCCCAAGCGACCTCATTCCGGCCTGTGGTTCTTTCTTCAACCCTCCTCCCAATCGAAAGAGCAATTGTTGCCTCCTTTACCAAAGAGCT ATCTCCGTATCAAGTAA
AA sequence Show only first row Show all	>Lus10001802 pacid=23140355 polypeptide=Lus10001802 locus=Lus10001802.g ID=Lus10001802.BGIv1.0 annot-version=v1.0 MLPTPLSTTPISKPQHITGRIRLRGTTQSSVSSKGLAPLDDQCPGGCLIFQEKPGYYYNSSSSSSEIDMELVGADGGNNSSSSNQLNNNNDNEEEEEEEE EEEEGEVVGSTNDEQEGASASCSDTWLQLSIGGQLTTHQRRRPDLIELDLLAGGSTTSTSWPLPPPPFLPQGFVGVAPIPPQPPGLFLQQQQQGPTSSLL QLTTGAAAADSVGGVLFTSTPSDNIINYWPSYMRPPGVVTCTEAPSPMHQYHHHHRHPNYLENYSMVGVGPNYYSSRPFQFQYNSSSGGRSDPNDNSDFR VIDPPKRPHSGLWFFLQPSSQSKEQLLPPLPKSYLRIK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13250			RING finger protein (.1)		Lus10001802 [exp]	0	1
AT5G13250			RING finger protein (.1)		Lus10002575 [exp]	1.0	0.9858
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10038066 [exp]	2.8	0.9446
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10024272 [exp]	7.6	0.9476
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Lus10042632 [exp]	9.3	0.9089
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012678 [exp]	11.1	0.9451
AT1G11410			S-locus lectin protein kinase ...		Lus10042939 [exp]	13.0	0.9333
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10026482 [exp]	13.3	0.8930
AT5G22400			Rho GTPase activating protein ...		Lus10022700 [exp]	13.9	0.9374
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10022080 [exp]	14.8	0.8843
AT4G39410	WRKY	ATWRKY13, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020832 [exp]	16.9	0.9397

Compare expression of checked genes

Lus10001802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.