Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13220 92 / 3e-23 ZIM JAS1, TIFY9, JAZ10, AT5G13220 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) AT1G74950 58 / 4e-10 ZIM TIFY10B, JAZ2 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) AT5G20900 57 / 7e-10 ZIM TIFY3B, JAZ12 jasmonate-zim-domain protein 12 (.1) AT1G19180 56 / 8e-10 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1 (.1.2) AT3G43440 55 / 4e-09 ZIM TIFY3A, JAZ11 jasmonate-zim-domain protein 11 (.1.2) AT1G70700 47 / 3e-06 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2) AT1G72450 44 / 3e-05 ZIM TIFY11B, JAZ6 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002576 [exp] 276 / 1e-95 AT5G13220 112 / 2e-31 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Lus10011929 [exp] 57 / 1e-09 AT5G20900 108 / 4e-29 jasmonate-zim-domain protein 12 (.1) Lus10039911 [exp] 52 / 6e-08 AT1G19180 161 / 3e-48 jasmonate-zim-domain protein 1 (.1.2) Lus10027648 [exp] 51 / 2e-07 AT1G19180 159 / 3e-47 jasmonate-zim-domain protein 1 (.1.2) Lus10027639 [exp] 48 / 2e-06 AT5G20900 107 / 8e-29 jasmonate-zim-domain protein 12 (.1) Lus10013166 [exp] 44 / 5e-05 AT1G74950 118 / 2e-32 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10014700 [exp] 44 / 6e-05 AT4G14720 181 / 3e-54 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10035804 [exp] 41 / 0.0003 AT5G20900 62 / 3e-11 jasmonate-zim-domain protein 12 (.1) Lus10008129 [exp] 40 / 0.0005 AT1G74950 114 / 1e-30 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G062500 [exp] 111 / 2e-30 AT5G13220 170 / 8e-54 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.003G165000 [exp] 105 / 5e-28 AT5G13220 167 / 2e-52 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.006G139400 [exp] 56 / 3e-09 AT1G19180 184 / 2e-57 jasmonate-zim-domain protein 1 (.1.2) Potri.018G047100 [exp] 54 / 6e-09 AT5G20900 122 / 6e-35 jasmonate-zim-domain protein 12 (.1) Potri.003G068900 [exp] 53 / 2e-08 AT1G72450 129 / 4e-36 TIFY DOMAIN PROTEIN 11B, jasmonate-zim-domain protein 6 (.1) Potri.006G217200 [exp] 53 / 3e-08 AT5G20900 126 / 3e-36 jasmonate-zim-domain protein 12 (.1) Potri.006G023301 [exp] 43 / 1e-05 AT1G30135 73 / 2e-17 jasmonate-zim-domain protein 8 (.1) Potri.011G083900 [exp] 39 / 0.0008 AT1G30135 69 / 1e-15 jasmonate-zim-domain protein 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF09425 [flax] [poplar] Jas_motif Jas motif CL0281 [flax] [poplar] PF06200 [flax] [poplar] tify tify domain
Representative CDS sequence Show only first row Show all	>Lus10001803 pacid=23140342 polypeptide=Lus10001803 locus=Lus10001803.g ID=Lus10001803.BGIv1.0 annot-version=v1.0 ATGTCCAGAGGTGGAGCAACCGTTGAGCTTGATTTATTCCGCGGCATCAACAACACATGTACTCATGTCGTCGATGGAGGCCGACCTCCTTCCGAGTCTC GCTTCCACCGCCTTCTCCGCCGTCAGAGAAGCCACCGAGATATCCAGCTGGGTGCTATCTCCAAAATCGACCCTCAGGTTCTAAAGTCAGTCTTTAATAA TTATGCATCCAACCAGTCCCACACCACTACCCCTCCGGCGACTCTGCCTCTCTACCCAACTGCGGCGCCTTGTGAAAATGATACAGCTCCCTTGACTATA TTCTACAACGGATCTGTCGTCGTTTTCGACCTTCCCCGTGACAAGGCGGAGAACATCCTCAAACTGGCTGAAAATAATGGCCTTCCATCCTCACCCGCCT GCACCCCTGCGGCGGTTCCTTCTTCGCTCGCCGACCATGTCGACTCTGTCACCGGAGCTGAACTGCCGATAGCTCGCCGGAAGTCGTTGCAGAGGTTCTT GGAGAAACGTAAGGAAAGTAGAAAGGAAATGACAGTGATTAGGTACCCACCACAACAGTGGCAGAGGGTCAGGTCGGTTGTATATGGTGGGGGTGGGAAG CTAGCTCAGATTATATCTACAATACATACACGCCAAAACCCGCATTAA
AA sequence Show only first row Show all	>Lus10001803 pacid=23140342 polypeptide=Lus10001803 locus=Lus10001803.g ID=Lus10001803.BGIv1.0 annot-version=v1.0 MSRGGATVELDLFRGINNTCTHVVDGGRPPSESRFHRLLRRQRSHRDIQLGAISKIDPQVLKSVFNNYASNQSHTTTPPATLPLYPTAAPCENDTAPLTI FYNGSVVVFDLPRDKAENILKLAENNGLPSSPACTPAAVPSSLADHVDSVTGAELPIARRKSLQRFLEKRKESRKEMTVIRYPPQQWQRVRSVVYGGGGK LAQIISTIHTRQNPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Lus10001803 [exp]	0	1
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10020691 [exp]	5.7	0.7965
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10034830 [exp]	6.9	0.8127
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10013035 [exp]	11.0	0.7613
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022728 [exp]	13.9	0.7949
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015897 [exp]	22.3	0.7812
AT3G52240			unknown protein		Lus10034158 [exp]	26.5	0.7524
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10041905 [exp]	27.2	0.7615
AT1G32120			unknown protein		Lus10023735 [exp]	27.6	0.6623
					Lus10006920 [exp]	29.6	0.7166
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10009270 [exp]	30.9	0.7780

Compare expression of checked genes

Lus10001803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.