Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28070 107 / 3e-29 AtCFL2 unknown protein AT2G33510 99 / 7e-26 AtCFL1 unknown protein AT3G11600 41 / 0.0001 unknown protein AT5G06270 41 / 0.0001 unknown protein AT3G52561 40 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002577 [exp] 184 / 9e-60 AT2G33510 99 / 1e-26 unknown protein Lus10004209 [exp] 44 / 2e-05 AT5G06270 100 / 4e-28 unknown protein Lus10029413 [exp] 44 / 2e-05 AT5G06270 100 / 4e-28 unknown protein Lus10021305 [exp] 43 / 2e-05 AT5G06270 122 / 8e-37 unknown protein Lus10034181 [exp] 42 / 4e-05 AT3G11600 87 / 3e-23 unknown protein Lus10043404 [exp] 42 / 4e-05 AT3G11600 78 / 1e-19 unknown protein Lus10016982 [exp] 41 / 0.0001 AT5G06270 122 / 4e-37 unknown protein Lus10025524 [exp] 40 / 0.0005 AT4G08910 49 / 4e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G165800 [exp] 150 / 8e-46 AT2G33510 162 / 7e-51 unknown protein Potri.001G062000 [exp] 140 / 8e-42 AT2G33510 152 / 4e-47 unknown protein Potri.002G231400 [exp] 44 / 2e-05 AT4G08910 54 / 4e-09 unknown protein Potri.009G161400 [exp] 42 / 3e-05 AT5G06270 91 / 9e-25 unknown protein Potri.005G165300 [exp] 43 / 4e-05 AT1G78170 124 / 4e-35 unknown protein Potri.004G200300 [exp] 41 / 6e-05 AT5G06270 71 / 7e-17 unknown protein Potri.014G150900 [exp] 42 / 9e-05 AT4G08910 49 / 3e-07 unknown protein Potri.016G073400 [exp] 41 / 9e-05 AT5G06270 115 / 2e-34 unknown protein Potri.002G096100 [exp] 42 / 0.0001 AT1G78170 119 / 3e-33 unknown protein Potri.006G206000 [exp] 40 / 0.0001 AT5G06270 108 / 8e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001804 pacid=23140347 polypeptide=Lus10001804 locus=Lus10001804.g ID=Lus10001804.BGIv1.0 annot-version=v1.0 ATGACAGCTCCGAACATGGCTGCCATCACTGAATCCCTAGAGCGGTCCTTCCAGAACTGTTCCCTTAATCACCACCGCACCGGCACATTGCCCGCCGCTG CTGCCTCCACCGAGAGATCCTCCAGCTCTGACTTTTCCGATCAAAGCCGTAATCCTCTGATTCATTCCTCTTCTTCTTCCTCTGACTCCACCGTGGAGCT CAACTCCCATGTATCCATGCCTTATGACTGGGAACAATGCCTCGATTTAAAGACAGGGGAGATATACTACATGAACTGGAAGAATGGGATGAGGGCAAAG CATGATCCAAGGCTGATGCTAACACAAGACTTGTTGATGAGTCGAGATCATGACTACAACAACTACAACTATTACTACTCAGATGGGGATGATGATAGCT CATCCTGCGACAGTACTGAGGAGTCATCATCAGAGTCGTCTCCTTGTTCCTCAAGAGACAATTTCAACAACAGTAGCATGATCAAGATAGTACAAGACGA GGATGTGTTGGTGGTAGCTGGATGCAAGAGATGCTTAATGTACTACATGCTCCCTAAGAAAGTTGACAATTGCCCACAATGCCGCGCCTCTCATCTTATT CACTTTGACAGATCACCTGATAACAACAACAACAATGCTTGA
AA sequence Show only first row Show all	>Lus10001804 pacid=23140347 polypeptide=Lus10001804 locus=Lus10001804.g ID=Lus10001804.BGIv1.0 annot-version=v1.0 MTAPNMAAITESLERSFQNCSLNHHRTGTLPAAAASTERSSSSDFSDQSRNPLIHSSSSSSDSTVELNSHVSMPYDWEQCLDLKTGEIYYMNWKNGMRAK HDPRLMLTQDLLMSRDHDYNNYNYYYSDGDDDSSSCDSTEESSSESSPCSSRDNFNNSSMIKIVQDEDVLVVAGCKRCLMYYMLPKKVDNCPQCRASHLI HFDRSPDNNNNNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33510		AtCFL1	unknown protein		Lus10001804 [exp]	0	1
AT2G33510		AtCFL1	unknown protein		Lus10002577 [exp]	2.8	0.9150
AT1G75580			SAUR-like auxin-responsive pro...		Lus10012432 [exp]	7.3	0.8985
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10003141 [exp]	8.3	0.9344
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10036914 [exp]	9.3	0.8678
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Lus10036753 [exp]	12.5	0.9173
AT5G26330			Cupredoxin superfamily protein...		Lus10010533 [exp]	13.3	0.9229
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10018761 [exp]	13.6	0.8505
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10042626 [exp]	15.3	0.9325
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10011333 [exp]	17.9	0.9257
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10037939 [exp]	23.2	0.8552

Compare expression of checked genes

Lus10001804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.