Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13190 211 / 6e-72 AtGILP GSH-induced LITAF domain protein, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G165900 [exp] 242 / 4e-84 AT5G13190 219 / 4e-75 GSH-induced LITAF domain protein, unknown protein Potri.001G061900 [exp] 241 / 7e-84 AT5G13190 222 / 4e-76 GSH-induced LITAF domain protein, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10601 [flax] [poplar] zf-LITAF-like LITAF-like zinc ribbon domain
Representative CDS sequence Show only first row Show all	>Lus10001805 pacid=23140344 polypeptide=Lus10001805 locus=Lus10001805.g ID=Lus10001805.BGIv1.0 annot-version=v1.0 ATGGGACAGAACGACGAACCGGTGGTCGGCGTGCCTTACTACTCTGGCCACAACCCTTACCAAGCTGGACTCATCCCTCCTAATGCCATCGTCGGCGATC CTAAGGGTATCCCTATCCAGCAGACTATGTTCCACGATACTCCTGCTCCTTTCAATTGCGTCTACTGCGGCAGCTCCGGTGTTACCCAAGTCAGATCAAA GCCTAGTTTGGCTGCTGTCGTGGGCTGCATGATGCCATTCATGCTCGGAGTGTGCTTTCTTTGCCCTTCGATGGACTGCCTCTGGCATAAATATCACTAC TGCCCAAGCTGCAAAGAAAAGGTTGGTGAATTTGAGAAGAATGATCCTTGCCTTGTGGTGGATCTCCCCCAGTGGAAGCAAGAGAGCTTTGCTTTGCCAG CATGA
AA sequence Show only first row Show all	>Lus10001805 pacid=23140344 polypeptide=Lus10001805 locus=Lus10001805.g ID=Lus10001805.BGIv1.0 annot-version=v1.0 MGQNDEPVVGVPYYSGHNPYQAGLIPPNAIVGDPKGIPIQQTMFHDTPAPFNCVYCGSSGVTQVRSKPSLAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY CPSCKEKVGEFEKNDPCLVVDLPQWKQESFALPA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13190		AtGILP	GSH-induced LITAF domain prote...		Lus10001805 [exp]	0	1
AT2G18210			unknown protein		Lus10041771 [exp]	3.7	0.9561
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10025989 [exp]	5.1	0.9592
					Lus10009731 [exp]	7.9	0.9590
					Lus10027919 [exp]	8.3	0.9638
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10018243 [exp]	12.6	0.9582
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035479 [exp]	16.7	0.9548
AT2G14095			unknown protein		Lus10001300 [exp]	19.9	0.9566
AT5G12340			unknown protein		Lus10036031 [exp]	19.9	0.9496
					Lus10020455 [exp]	20.2	0.9537
AT5G58950			Protein kinase superfamily pro...		Lus10025442 [exp]	20.6	0.9261

Compare expression of checked genes

Lus10001805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.