Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33500 290 / 2e-93 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT1G28050 206 / 8e-61 CO COL15 B-box type zinc finger protein with CCT domain (.1) AT5G48250 112 / 4e-27 CO COL10 B-box type zinc finger protein with CCT domain (.1) AT3G07650 110 / 2e-26 CO COL9 CONSTANS-like 9 (.1.2.3.4) AT2G47890 107 / 2e-26 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT1G68190 104 / 3e-24 CO B-box zinc finger family protein (.1) AT4G15250 96 / 2e-21 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT3G21880 96 / 3e-21 CO COL12 B-box type zinc finger protein with CCT domain (.1) AT5G15840 85 / 9e-18 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2) AT5G24930 82 / 2e-16 CO COL4, ATCOL4 CONSTANS-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002578 [exp] 817 / 0 AT1G28050 299 / 3e-97 B-box type zinc finger protein with CCT domain (.1) Lus10040900 [exp] 124 / 4e-31 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10041096 [exp] 105 / 7e-25 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1) Lus10035257 [exp] 100 / 6e-23 AT1G68190 194 / 8e-59 B-box zinc finger family protein (.1) Lus10031584 [exp] 96 / 4e-21 AT3G21880 256 / 2e-81 B-box type zinc finger protein with CCT domain (.1) Lus10034625 [exp] 96 / 9e-21 AT1G68190 182 / 3e-52 B-box zinc finger family protein (.1) Lus10041526 [exp] 93 / 3e-20 AT2G33500 115 / 1e-32 B-box type zinc finger protein with CCT domain (.1.2) Lus10015098 [exp] 92 / 5e-20 AT3G21880 260 / 4e-84 B-box type zinc finger protein with CCT domain (.1) Lus10005936 [exp] 78 / 2e-16 AT2G47890 126 / 3e-35 B-box type zinc finger protein with CCT domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G061800 [exp] 389 / 2e-130 AT2G33500 213 / 6e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.003G166000 [exp] 242 / 4e-73 AT1G28050 204 / 2e-59 B-box type zinc finger protein with CCT domain (.1) Potri.001G323500 [exp] 231 / 3e-70 AT2G33500 213 / 2e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.014G134601 [exp] 124 / 7e-32 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.014G170600 [exp] 125 / 2e-31 AT3G07650 328 / 3e-110 CONSTANS-like 9 (.1.2.3.4) Potri.002G208100 [exp] 120 / 5e-30 AT2G47890 276 / 4e-91 B-box type zinc finger protein with CCT domain (.1.2) Potri.002G214500 [exp] 108 / 2e-25 AT3G07650 355 / 9e-121 CONSTANS-like 9 (.1.2.3.4) Potri.008G125200 [exp] 103 / 2e-23 AT1G68190 144 / 8e-39 B-box zinc finger family protein (.1) Potri.017G039301 [exp] 99 / 3e-22 AT3G21880 288 / 2e-94 B-box type zinc finger protein with CCT domain (.1) Potri.007G121200 [exp] 97 / 2e-21 AT3G21880 291 / 1e-95 B-box type zinc finger protein with CCT domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [flax] [poplar] zf-B_box B-box zinc finger CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10001806 pacid=23140352 polypeptide=Lus10001806 locus=Lus10001806.g ID=Lus10001806.BGIv1.0 annot-version=v1.0 ATGGCGAATCCCATACCAGAAGGCGGCGGCGGAGCTGTAGTCCCCTGCGATTTCTGTAGCGACCAGCTCGCCGTCCTCTACTGTAGAGCTGACTCAGCAA AGCTATGCTTGTTCTGCGACCAGCACGTCCACTCAGCCAACCTCCTCTCCAGGAAGCATGTCCGCTCCCAGATCTGCGATAACTGCAGCTCCGAGGCCGT TTCCGTCCGATGTGCCACTGACAATCTCGTCCTCTGCCACGAGTGCGATTCCGATTCTCACGGAAGCTGTGCCGTCGCCTCTTCTCACGATCGGACTTCC TTGGAAGGCTTCTCCGGCTGCCCTTCAGCTCTCGAGCTCGCTTCCATCTGGGGGTTTGATCTTACGAACAAGGAGAAATCAGTGGTGGATGATCGATACT GTACTATTCCGATTCACGACTGGATCGGAGGAGATAACGGCAGTGATTGGATGACACTAATAGAGCGGTGGATGGGTGTGTCTCAGGATGGATCTGTCTT ACCGGACTTCACTGTGCCTATCGGAAACGGTCCCATGTTTGGAGGGAAGGGGCAGACCGCTTCCTTTAAGAAGCAGGGGAGTCCCCCTCCTAGTTGCGGT AGGTACAAGCAAGTCATATATGAGCAGCTGGTTGAGTTGCGCAAACGAGATTTGATTCATGGCAGAGAGACTCCGGCACGGAGGACACCTAGTAGAAGCG GCTGGGAGGGAGCTGATCTTGCTAGTGGGAATGATGAGGTTTGTGCTGATAATCATCATCGTCAGTGTTTGCTGCAGGAAGAGCACAAGGCGCCATTTTC TGCTATGCTAAATTTACCAGCTCCAGCTGCACCGGAACCCCGACCAATTATTATAGATCACTTCCCTGGTCAGAACACAGAGTGGAATAGTAACAGCAAG ATTAATAAAAACAACACTAATCCCACTTCTAATAGCACTACACAGATATGGGACTTCAATTTAGGACAATCGAGGAACGAAGATGATAAAAGTGGATTGG AGGTTGGGTATGGTGCAGTCAATCATGCAGGATTCACCATGAAAGATATCAGCGATTTATTCAAAGAATCAGCACTAGACGGTACAAGGTTGCTCGGTGA GATGTACCATTTGAATTCCTCCTCATTTGAACATCATGATGACATGGTTTCCTTCAGTACAACCTCGATCAGCCAGAGCGGAGGAGCAATATCAGAGAGC AACACTCTAAAAATGCAGAACACATCGAAGGTGGGAAGAAAGAGAACTCCTGGGAGGTGTAAAGATACCAAATTTGGAGAATTTAGCGTTGGGACGGCAA GAACAGAAGCATCAGCAGTAGGAAACAAGCTGGATACGGAAATGCTGGCACAGAACAGAGGCAATGCGATGCAGCGGTACATGGAGAAGAAGAAGACTCG GAGGTATGATAAGCACATACGATACGAGTCAAGGAAGGCAAGAGCTGAAACAAGGACGCGGGTGAAGGGTCGATTCGTGAAAGCCACTGAGGCCCCTGAG AGCTGA
AA sequence Show only first row Show all	>Lus10001806 pacid=23140352 polypeptide=Lus10001806 locus=Lus10001806.g ID=Lus10001806.BGIv1.0 annot-version=v1.0 MANPIPEGGGGAVVPCDFCSDQLAVLYCRADSAKLCLFCDQHVHSANLLSRKHVRSQICDNCSSEAVSVRCATDNLVLCHECDSDSHGSCAVASSHDRTS LEGFSGCPSALELASIWGFDLTNKEKSVVDDRYCTIPIHDWIGGDNGSDWMTLIERWMGVSQDGSVLPDFTVPIGNGPMFGGKGQTASFKKQGSPPPSCG RYKQVIYEQLVELRKRDLIHGRETPARRTPSRSGWEGADLASGNDEVCADNHHRQCLLQEEHKAPFSAMLNLPAPAAPEPRPIIIDHFPGQNTEWNSNSK INKNNTNPTSNSTTQIWDFNLGQSRNEDDKSGLEVGYGAVNHAGFTMKDISDLFKESALDGTRLLGEMYHLNSSSFEHHDDMVSFSTTSISQSGGAISES NTLKMQNTSKVGRKRTPGRCKDTKFGEFSVGTARTEASAVGNKLDTEMLAQNRGNAMQRYMEKKKTRRYDKHIRYESRKARAETRTRVKGRFVKATEAPE S

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28050	CO	COL15	B-box type zinc finger protein...		Lus10001806 [exp]	0	1
AT5G16510		RGP5	reversibly glycosylated protei...		Lus10009555 [exp]	2.8	0.8102
AT5G01970			unknown protein		Lus10031947 [exp]	6.8	0.8322
AT5G47540			Mo25 family protein (.1)		Lus10010497 [exp]	12.8	0.7720
AT5G25265			unknown protein		Lus10041028 [exp]	15.3	0.8043
AT1G36730			Translation initiation factor ...		Lus10000448 [exp]	16.7	0.7700
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10026403 [exp]	18.2	0.7717
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10030311 [exp]	19.5	0.7463
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10030025 [exp]	22.3	0.7866
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10013575 [exp]	28.6	0.7520
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Lus10034145 [exp]	29.9	0.7693

Compare expression of checked genes

Lus10001806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.