Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33490 421 / 2e-137 hydroxyproline-rich glycoprotein family protein (.1) AT5G41100 293 / 2e-89 unknown protein AT3G26910 280 / 3e-84 hydroxyproline-rich glycoprotein family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002580 [exp] 995 / 0 AT2G33490 484 / 3e-164 hydroxyproline-rich glycoprotein family protein (.1) Lus10032001 [exp] 379 / 4e-121 AT2G33490 473 / 8e-160 hydroxyproline-rich glycoprotein family protein (.1) Lus10035172 [exp] 338 / 1e-105 AT2G33490 436 / 2e-145 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G166300 [exp] 506 / 2e-170 AT2G33490 493 / 1e-167 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G061500 [exp] 504 / 2e-169 AT2G33490 478 / 8e-162 hydroxyproline-rich glycoprotein family protein (.1) Potri.017G063000 [exp] 425 / 1e-138 AT2G33490 435 / 1e-144 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G324800 [exp] 407 / 4e-132 AT2G33490 421 / 2e-139 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0145 [flax] [poplar] Golgi-transport PF03114 [flax] [poplar] BAR BAR domain
Representative CDS sequence Show only first row Show all	>Lus10001808 pacid=23140345 polypeptide=Lus10001808 locus=Lus10001808.g ID=Lus10001808.BGIv1.0 annot-version=v1.0 ATGAAGACTTCGCTCAGGAGACTACGAGGCCTCACAATTAACAAGTATAATCACAACAATAATCACGACGATGGAGACGTAGGACGACATCTTCGCTCCT TGGCTCAATTGGACGAGCTAGCTCGCGCTACTCAGGATATGCAGGACATGAGAGAGTGTTACGATGGCCTACTCTCTGCTGCTGCCGCTACAGCTAATAG TGCCTATGAATTCTCGGAGTCATTGCGGGAAATGGGAGCTTGCCTTCTGGAGAAAACTGCATTGAACGATGACGAGGAAAGTGGTAAGGTATTGTTGATG CTGGGAAAAGTGCAGTTTGAGCTACAGAAACTTGTTGATGTCTATCGTTCCCACGTATTCAAAACAATCACTGTGCCGTCGGATTCTCTTCTCAATGAGC TTCAAACAGTTGAGGAAATGAAGGAGCAGTGCGATGACAAAAGAGAAATGTATGAGTATATGAGAACGAGGCAGAAGGAAAAAGGGAGAGGAAGGAACAT AAAAGGAGAGGAGAGCTTCTCCGTGGACCAAGTGCAATCAGCGCAGGATCAGTATGATGAGGAAGCAACCCTGTTCGTCTTTCGTTTGAAGTCCCTGAAG GAAGGGCAGTCTCGTAGTCTTCTTACTCAGGCCGCAAGGCACCATGCGGCTCAGATGTCCTTCTTCAAGAAAGCTCTTAAAGCTCTTGAAGACGTTGAAC CACATGTGAAATCTGTCACTGAACAACGGTTCATTAACTACCACTTTGATGGCCTTGATGAGGATGATGGTGAGGACGATGATGACAGCAATACCAATGT CACTAACGACGATGGTGAGCTGAGTTTCCAGCATGATCAAAACGATGACGGTGATGTTTCCACTTCAAGTGACTCGATGGAGTTGGATGTTGAAGAGATC ACATTTCCCAAAATTTCAAATTCATCATCCACAAAGGTAAATCCTGGTAAAAGCTACAGGTCATTTTCCTTCAGAGGAGACATTAGAGCACTCAGTCAAT CAGCTCCACTTTATGCTGTAAGGAAATCTGCTTCAATTGACAAGATGGAACAATTGCGACCATCATTTGCCAAAAAGTTCAATTCCTACGTCCTCCCAAC TCCAGGTGATTCCAACGGTACAAGTTCCACACTTTTCAGCGGTCCAATTGCTCCGACATTCAAAGGAAATGGAAGTGGGCGTTGGTCACAGTCTAACTTT CAGGAATCCAAGAATCACGAAAAGCTTTTGAGAGATGAGAAACTAACATCACAGTCAGTACTGAGAGAGAGCAACAATAGATCTCCGACCACACGCTTAA CTCCTCCTCCACCAATGGCGGATAGGCTGCTACTTTCAAGGCTTGACCCGGTTAGCGGGATCTCTGACTACAACAAGAAGATCAAAAGACAAGCCTTTTC CGGACCCATTGCAAGGAAATCTTGGTCCTCCATCCCTTCTTCATTGGAGAAAGCTCAGGGGCTATCTGGACCTCTTTTGCAGCAGCAGACCCACCGAATG GCTCATCAAATGCAATCGTCCTCTCCGAGGGTGTCGCCAAGTAACTCCCCAACTATACTGTCTTCGCCTAGAATAAGCGAACTTCATGAACTTCCCAGAC CTCCTCCATCCAGGAATATCAGACCTTGGAGCTTTGGAGGAGTTGGACACTCAGCTCCATTGTTTCCCAAAGTTCAAATGCAGCGTTCTTCTGCTACTGC TACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACT GCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTA CTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGC TACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACT GCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTACTGCTGCTACTCCTCTACCAATCCCTTCTCAGGTGT CTCGCAGTTTGTCGATACCATCTTCGGGCCAGAGGTCATTGAATGCTGTGTCGCCTCCTCCCCCCGCAACTGAAAGTCCAGACAAGATGATTGAAGAGTT TTTCTCCCCTCCTCTTACACCAATTTCTGCACTGACTAGTCAACCAATGGCTGCATATTCTTTTCAGACCAGTAATCGAGTGAAAAATGATAAGTCTTAG
AA sequence Show only first row Show all	>Lus10001808 pacid=23140345 polypeptide=Lus10001808 locus=Lus10001808.g ID=Lus10001808.BGIv1.0 annot-version=v1.0 MKTSLRRLRGLTINKYNHNNNHDDGDVGRHLRSLAQLDELARATQDMQDMRECYDGLLSAAAATANSAYEFSESLREMGACLLEKTALNDDEESGKVLLM LGKVQFELQKLVDVYRSHVFKTITVPSDSLLNELQTVEEMKEQCDDKREMYEYMRTRQKEKGRGRNIKGEESFSVDQVQSAQDQYDEEATLFVFRLKSLK EGQSRSLLTQAARHHAAQMSFFKKALKALEDVEPHVKSVTEQRFINYHFDGLDEDDGEDDDDSNTNVTNDDGELSFQHDQNDDGDVSTSSDSMELDVEEI TFPKISNSSSTKVNPGKSYRSFSFRGDIRALSQSAPLYAVRKSASIDKMEQLRPSFAKKFNSYVLPTPGDSNGTSSTLFSGPIAPTFKGNGSGRWSQSNF QESKNHEKLLRDEKLTSQSVLRESNNRSPTTRLTPPPPMADRLLLSRLDPVSGISDYNKKIKRQAFSGPIARKSWSSIPSSLEKAQGLSGPLLQQQTHRM AHQMQSSSPRVSPSNSPTILSSPRISELHELPRPPPSRNIRPWSFGGVGHSAPLFPKVQMQRSSATATATATATATATATATATATATATATATATATAT ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT ATATATATATATATATATATATAATPLPIPSQVSRSLSIPSSGQRSLNAVSPPPPATESPDKMIEEFFSPPLTPISALTSQPMAAYSFQTSNRVKNDKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33490			hydroxyproline-rich glycoprote...		Lus10001808 [exp]	0	1
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10043117 [exp]	1.0	0.8148
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10009279 [exp]	7.7	0.7672
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Lus10019156 [exp]	9.5	0.7578
AT4G18270		ATTRANS11	ARABIDOPSIS THALIANA TRANSLOCA...		Lus10038493 [exp]	13.8	0.6712
AT3G63290			2-oxoglutarate (2OG) and Fe(II...		Lus10004080 [exp]	15.5	0.6741
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10039924 [exp]	15.8	0.6835
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	15.9	0.7546
AT4G35240			Protein of unknown function (D...		Lus10014445 [exp]	18.3	0.6983
AT5G20050			Protein kinase superfamily pro...		Lus10013660 [exp]	27.4	0.6368
AT5G65540			unknown protein		Lus10035950 [exp]	37.5	0.6752

Compare expression of checked genes

Lus10001808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.