Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13180 270 / 2e-91 NAC VNDIP2, ANAC083, VNI2 VND-interacting 2, NAC domain containing protein 83 (.1) AT2G33480 264 / 5e-89 NAC ANAC041 NAC domain containing protein 41 (.1.2) AT3G04070 186 / 2e-57 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G69490 183 / 2e-57 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT1G61110 182 / 3e-56 NAC ANAC025 NAC domain containing protein 25 (.1) AT4G27410 180 / 1e-55 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G77450 176 / 1e-54 NAC ANAC032 NAC domain containing protein 32 (.1) AT3G15510 179 / 2e-54 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT1G65910 181 / 4e-53 NAC ANAC028 NAC domain containing protein 28 (.1) AT1G52890 172 / 2e-52 NAC ANAC019 NAC domain containing protein 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002581 [exp] 469 / 3e-170 AT5G13180 273 / 6e-93 VND-interacting 2, NAC domain containing protein 83 (.1) Lus10036773 [exp] 191 / 7e-60 AT1G69490 318 / 1e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10037156 [exp] 191 / 7e-60 AT1G69490 318 / 2e-109 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10030446 [exp] 189 / 3e-59 AT1G69490 302 / 2e-103 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10026617 [exp] 186 / 5e-58 AT1G69490 298 / 1e-101 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10011215 [exp] 187 / 9e-58 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1) Lus10026496 [exp] 186 / 3e-57 AT1G61110 244 / 6e-79 NAC domain containing protein 25 (.1) Lus10023179 [exp] 186 / 3e-57 AT1G61110 248 / 2e-80 NAC domain containing protein 25 (.1) Lus10015076 [exp] 186 / 4e-57 AT1G61110 247 / 5e-80 NAC domain containing protein 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G061200 [exp] 337 / 1e-117 AT5G13180 310 / 6e-107 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.003G166500 [exp] 323 / 2e-112 AT5G13180 310 / 4e-107 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.012G103500 [exp] 249 / 2e-83 AT5G13180 229 / 2e-75 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.015G102100 [exp] 245 / 7e-82 AT5G13180 232 / 8e-77 VND-interacting 2, NAC domain containing protein 83 (.1) Potri.008G089000 [exp] 187 / 1e-58 AT1G69490 331 / 6e-115 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.011G046700 [exp] 188 / 4e-58 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.019G031400 [exp] 187 / 1e-57 AT3G04070 332 / 1e-112 NAC domain containing protein 47 (.1.2) Potri.004G038000 [exp] 186 / 4e-57 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.013G054000 [exp] 184 / 3e-56 AT3G04070 338 / 9e-115 NAC domain containing protein 47 (.1.2) Potri.011G123500 [exp] 181 / 2e-55 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10001809 pacid=23140343 polypeptide=Lus10001809 locus=Lus10001809.g ID=Lus10001809.BGIv1.0 annot-version=v1.0 ATGGAGAAGATGAGCTTTGTCAAGAATGGAGTGCTGAGACTGCCACCTGGCTTCAGATTCCACCCAACTGACGAGGAGCTCGTGGTTCAATACCTCAAAC GGAAAGTCTATTCCTTTCCTTTGCCCGCTTCCATCATTCCCGAAGTCGATGTCTGCAAGTCTGATCCTTGGGATTTACCAGGTGATTTGGAGCAAGAGAG GTACTTTTTCAGCACCAAGGAGGCCAAATATCCCAATGGGAACCGTTCCAATAGAGCTACTGGGTCAGGCTACTGGAAGGCAACAGGGATAGACAAGCAA ATTGTGGCTGCTTCTAAAACTGTTGTTGGGATGAAGAAAACTCTGGTTTTTTACAGAGGGAAGCCCCCACATGGCGCTAGAACTGATTGGATCATGCATG AGTACCGCTTCCTTCCTTCTCCTTCTGATGCTCCCCACCAGCGGATGGAGAATTGGGTTCTGTGCCGAATATTTTTGAAGAAGAGAGGTTCCAAGAATGA GGAGGATGCAGGATGCTGCATTAAGCAGCTTGGTTCTTCTAACCAGACAGTGACCAAGCATGTCAAACCAGCTTTGACCAAGAAGCCTGTGTTCTACGAC TTCATGACAAAACCGTGTGGTTCATCCTCAGGAACAAGTGGGATCACAGATGATGTTTCCAATAATGAAACAGATGAGCATGAGGAAAATAGCAGCAGCG GCAACACTTCTTCTTTCCCTCATTTCAGGAGAAAACCATAG
AA sequence Show only first row Show all	>Lus10001809 pacid=23140343 polypeptide=Lus10001809 locus=Lus10001809.g ID=Lus10001809.BGIv1.0 annot-version=v1.0 MEKMSFVKNGVLRLPPGFRFHPTDEELVVQYLKRKVYSFPLPASIIPEVDVCKSDPWDLPGDLEQERYFFSTKEAKYPNGNRSNRATGSGYWKATGIDKQ IVAASKTVVGMKKTLVFYRGKPPHGARTDWIMHEYRFLPSPSDAPHQRMENWVLCRIFLKKRGSKNEEDAGCCIKQLGSSNQTVTKHVKPALTKKPVFYD FMTKPCGSSSGTSGITDDVSNNETDEHEENSSSGNTSSFPHFRRKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Lus10001809 [exp]	0	1
AT4G34000	bZIP	AtABF3, ABF3, D...	DC3 PROMOTER-BINDING FACTOR 5,...		Lus10019850 [exp]	6.0	0.9324
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10021299 [exp]	6.7	0.9409
AT1G03620			ELMO/CED-12 family protein (.1...		Lus10039805 [exp]	8.8	0.9254
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10024569 [exp]	8.9	0.9174
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10026038 [exp]	9.5	0.9113
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10003808 [exp]	10.2	0.9138
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10042055 [exp]	11.0	0.9105
AT3G61060		ATPP2-A13	phloem protein 2-A13 (.1.2)		Lus10027423 [exp]	12.2	0.9199
AT3G53400			unknown protein		Lus10019932 [exp]	14.1	0.9236
AT4G32140			EamA-like transporter family (...		Lus10041032 [exp]	15.7	0.9112

Compare expression of checked genes

Lus10001809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.