Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24020 313 / 9e-98 NLP7 NIN like protein 7 (.1) AT1G64530 226 / 7e-66 NLP6 Plant regulator RWP-RK family protein (.1) AT2G43500 105 / 7e-24 NLP8 Plant regulator RWP-RK family protein (.1.2) AT3G59580 98 / 1e-21 NLP9 Plant regulator RWP-RK family protein (.1.2) AT4G35270 97 / 2e-21 NLP2 Plant regulator RWP-RK family protein (.1) AT2G17150 90 / 4e-19 NLP1 Plant regulator RWP-RK family protein (.1.2) AT1G20640 88 / 2e-18 NLP4 Plant regulator RWP-RK family protein (.1.2) AT1G76350 86 / 1e-17 NLP5 Plant regulator RWP-RK family protein (.1) AT4G38340 84 / 6e-17 NLP3 Plant regulator RWP-RK family protein (.1) AT5G53040 47 / 7e-06 GRD, RKD4 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003199 [exp] 785 / 0 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10023049 [exp] 149 / 1e-38 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10008143 [exp] 99 / 1e-21 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10019368 [exp] 97 / 3e-21 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10023930 [exp] 94 / 5e-20 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10014428 [exp] 93 / 6e-20 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10016018 [exp] 92 / 1e-19 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10012257 [exp] 92 / 2e-19 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10014429 [exp] 86 / 3e-18 AT1G20640 132 / 7e-34 Plant regulator RWP-RK family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G143000 [exp] 421 / 2e-138 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.001G087900 [exp] 394 / 6e-128 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.007G133400 [exp] 100 / 4e-22 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.017G018500 [exp] 98 / 1e-21 AT2G43500 811 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.004G205500 [exp] 94 / 4e-20 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166932 [exp] 93 / 5e-20 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 91 / 3e-19 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 90 / 6e-19 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.002G009700 [exp] 89 / 1e-18 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.009G087500 [exp] 88 / 2e-18 AT4G35270 301 / 5e-92 Plant regulator RWP-RK family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10001810 pacid=23154503 polypeptide=Lus10001810 locus=Lus10001810.g ID=Lus10001810.BGIv1.0 annot-version=v1.0 ATGAAGGAGCATTTCCAGAGTCTTAAGATATCGTCAGGTATGGATCTTAACGAGGAGGAAGGATTTGTCGAGATAATCGAAGCTTCGGAAGATGGGAAGC TTGATTACAGCCTTGAATGCGTTCGAGTCATACCACATTCTTTCCCAGATGTTGATCATGCGTTGCCAAATGAAATGGAGGTTGGGCAGCAAGCTGTGGA GTTGAATACCGTTGATAATGTCGAAAAAAATTATAGTGATGTTCATGTAGAAACCAGTTTTCCTCTACTGCCACTTAAAGATGCTTCAAAGAGACTCGGC GTTTGCCCGACTACCATGAAGCGAATATGCAGGCAACATGGGATCTCTCGATGGCCGTCTCGCAAGATCAACAAGGTGAACAGATCCCTCACCAAGCTAA AAAAGGTGATTGAATCTGTTCAAGTTGCTGACGGGGCATTTGATTTAACACCTCTGAATAATACATCGCCACTTCCTGTTGCCGTCAGTTCCATTTCCTG GCCTTCTGACATGAATGGATCCCATAGAAATAGCAATGGCATCCCCAACTGTGAAATACCAGGAAATCTGGGTTCCCCGGAGGTGCGTCAAGGTTCAAAC AAGTCGAAATCCGGAAGCGTGTCGAAAGAAGACAGCGTTGGCAACTCTACATCTCACGGTTCATGTCAAGGAAGTCCAGCAAACGAAAGCGCCCCTGCAA AGGACACATCTGATGTTTCACCAGTTCGTGATTCGTCCCGGAAACCACCCGTAGGATCACCTCCAGGCTTCATATTTGACGATATCAAGCTTTCTTCGGC AGCATACTCGATCCCGGACGCCCTGGTGGCTACAGAACCATTCGGCGAGATGCTAGTTGAAGATGCTGGAAGTTCCAAGGACTTGCGAAACCTTTGCCCA TCGATCTTCGATGACCGAGTTCCAGAGTCCAGCGGGACGAATCCTGCTCCTCTTCCGGCAGCTGCCATCCGACACTATCCAGTACCGGATCCAGCATCTT GGCAAGAAGAAGCAAAGAGCTTGATCATCAAGGCGATGTACAAGGAAGACATAATAAGGTTCCGAATTTCTCCTAGCTGTGGGATCACAGAGCTGAAGGA GGAAGTGGGGAGAAGGCTGAAGCTTGAAGTTGGTGTCTTCGACGTCAAGTATCTGGACGACGACAACGAATGGGTTCTGATTGTCTGCGACGCAGACTTA CAAGAATGCATAGACATCACCAGGTCGTCGGGGAGTAGTATAGTCCGGCTGTCGATTCACGATGTCGCTGGGAATCTCGGCAGCTCCTGCGAAAGCACCG GTGGGGAATTGAAGTAG
AA sequence Show only first row Show all	>Lus10001810 pacid=23154503 polypeptide=Lus10001810 locus=Lus10001810.g ID=Lus10001810.BGIv1.0 annot-version=v1.0 MKEHFQSLKISSGMDLNEEEGFVEIIEASEDGKLDYSLECVRVIPHSFPDVDHALPNEMEVGQQAVELNTVDNVEKNYSDVHVETSFPLLPLKDASKRLG VCPTTMKRICRQHGISRWPSRKINKVNRSLTKLKKVIESVQVADGAFDLTPLNNTSPLPVAVSSISWPSDMNGSHRNSNGIPNCEIPGNLGSPEVRQGSN KSKSGSVSKEDSVGNSTSHGSCQGSPANESAPAKDTSDVSPVRDSSRKPPVGSPPGFIFDDIKLSSAAYSIPDALVATEPFGEMLVEDAGSSKDLRNLCP SIFDDRVPESSGTNPAPLPAAAIRHYPVPDPASWQEEAKSLIIKAMYKEDIIRFRISPSCGITELKEEVGRRLKLEVGVFDVKYLDDDNEWVLIVCDADL QECIDITRSSGSSIVRLSIHDVAGNLGSSCESTGGELK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24020		NLP7	NIN like protein 7 (.1)		Lus10001810 [exp]	0	1
AT2G46080			unknown protein		Lus10005122 [exp]	3.5	0.8820
AT1G59710			Protein of unknown function (D...		Lus10013281 [exp]	5.5	0.8497
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10023794 [exp]	5.5	0.8551
AT5G10530			Concanavalin A-like lectin pro...		Lus10033779 [exp]	8.5	0.8337
AT4G16530			Family of unknown function (DU...		Lus10000730 [exp]	10.1	0.8092
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10025203 [exp]	10.7	0.8147
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10007254 [exp]	15.5	0.7830
AT2G45530			RING/U-box superfamily protein...		Lus10000211 [exp]	17.3	0.8064
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Lus10042996 [exp]	17.5	0.8075
AT5G51190	AP2_ERF		Integrase-type DNA-binding sup...		Lus10032499 [exp]	17.7	0.7948

Compare expression of checked genes

Lus10001810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.