Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64530 588 / 0 NLP6 Plant regulator RWP-RK family protein (.1) AT4G24020 564 / 0 NLP7 NIN like protein 7 (.1) AT1G20640 300 / 8e-93 NLP4 Plant regulator RWP-RK family protein (.1.2) AT1G76350 295 / 3e-91 NLP5 Plant regulator RWP-RK family protein (.1) AT4G35270 278 / 8e-84 NLP2 Plant regulator RWP-RK family protein (.1) AT2G17150 260 / 2e-79 NLP1 Plant regulator RWP-RK family protein (.1.2) AT2G43500 256 / 1e-75 NLP8 Plant regulator RWP-RK family protein (.1.2) AT3G59580 249 / 1e-73 NLP9 Plant regulator RWP-RK family protein (.1.2) AT4G38340 213 / 8e-61 NLP3 Plant regulator RWP-RK family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003199 [exp] 897 / 0 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10023049 [exp] 610 / 0 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10032423 [exp] 378 / 5e-127 AT1G64530 323 / 6e-101 Plant regulator RWP-RK family protein (.1) Lus10012257 [exp] 299 / 4e-92 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 292 / 2e-89 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10014428 [exp] 270 / 1e-81 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023930 [exp] 263 / 5e-79 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10008143 [exp] 256 / 7e-76 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10013224 [exp] 250 / 4e-75 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G087900 [exp] 648 / 0 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.003G143000 [exp] 644 / 0 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.002G009700 [exp] 323 / 8e-101 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 305 / 5e-94 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 282 / 2e-85 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166932 [exp] 278 / 7e-84 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 273 / 7e-82 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 263 / 3e-78 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166400 [exp] 261 / 9e-78 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.007G133400 [exp] 256 / 2e-75 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001811 pacid=23154493 polypeptide=Lus10001811 locus=Lus10001811.g ID=Lus10001811.BGIv1.0 annot-version=v1.0 ATGGGTGAGCAAGAAGATACTGCTGAGAAGTCAAAGCACCAAAACCAGAGCCAGGAGCATGGACAACAGCAGCACTCTGTTTTCATCACTTCCAGAGGAG ATTCATTGATGGAGATGGATCTTGATCTCGACAACCCCTGGCCGTTGGATCAAATCTCTTTCGCTTCCAGTCATCCCATGTCTCCCCTTTTCCTCTCTTC CACCGCCGACGCACATCCCTGTTCTCCTCTTTGGACCTTCTCCGACGCCGACGAGCTCAAGCTTCCTCCTTCCACCGCTCCGCCGCCCTCCTCTGCCGCC GTCCGCGATTACCCAATCTTTGTCACATGCAATCTGAGCTCAACAACCAGCAGAGAAATCGACGAGGGGAAGAAGATTCCTCCTCCGCCGTCTCCGCGGT GGGGATTCGCGCCAACAGAAAGCCCAGATGGATACAGCGTGATCAAAGAGAGGATGACTCGAGCTTTAAGATACTTGAAAGAGTCAACCGAGCAGCACAT TCTAGCTCAAGTTTGGGCGCCTGTGAAAAACGGAGGTCGATATGTTCTCACAACTTCAGAGCAGCCGTTCGTTCTCGATCCTCACTGCAGCGGTCTCAAT CAGTACAGGATGGTGTCCCTTCTGTACACTTTCTCAGTGGATGAAGAAATCGATGATGGAGAGCTCCACGGCCTACCGGGGAGGGTTTTCCAGCAGAAGT TGCCTGAATGGACTCCTAATGTGCAGTATTACTCCAGCAAGGAGTATCCGAGGCTTGGTCATGCTTTGCACTATAATGTTCGAGGAACTCTGGCCTTGCC TGTTTTTGAAAAATCTGGGAAGTCCTGTGTTGGTGTTGTTGAGCTTGTTATGACTTCCCAGTTGGTCAATTATGCTCCTGAAGTTGATAAAGTCTGCAAG GCTCTTGAGGCTGTAAACCTGAAGAGTTCTGAAATATTGGACCATCCAAATCCACAGATATGCAATGAAGGTCGACAGAATGCACTGGCCGAGATTCTCG AGATATTGACAGTTGTTTGTGAAGCTCAAAAGCTCCCCTTGGCTCAAACTTGGGTTCCATGTATGCATCGCAGCGTCTTGGCTCATGGTGGTGGTCTCAA GAAGAGCTGCGCCAGCTTCGACGGAAGCTGCAACGGCCGAGTCTGTATGTCAGTTACCGATTTAGCCTTCTACGTCGTGGATGCTCAAGTTTGGGGCTTC AGGCAAGCCTGCCTTGAGCATCATTTGCAAACCGGCCAGGGTGTAGCAGGAAGAGCATTCTTGTCCCACAATGCTTGTTTCTGTAGAGACATTACGAATT TCTGCAAGACTCAGTACCCTCTAGTCCACTACGCACGAATGTTCGGGCTGCATGGCTGTTTTTCCATCTGCTTGAAGAGCAGCCACACCGGACATAACCC AGCCACACCGGAGATGACGATTACGTCCTTGAATTCTTTCTCCCTCCCGAGAATGAGGGGTTCGAACAGAAAAAGCTCCTGGGATCATTGCTAG
AA sequence Show only first row Show all	>Lus10001811 pacid=23154493 polypeptide=Lus10001811 locus=Lus10001811.g ID=Lus10001811.BGIv1.0 annot-version=v1.0 MGEQEDTAEKSKHQNQSQEHGQQQHSVFITSRGDSLMEMDLDLDNPWPLDQISFASSHPMSPLFLSSTADAHPCSPLWTFSDADELKLPPSTAPPPSSAA VRDYPIFVTCNLSSTTSREIDEGKKIPPPPSPRWGFAPTESPDGYSVIKERMTRALRYLKESTEQHILAQVWAPVKNGGRYVLTTSEQPFVLDPHCSGLN QYRMVSLLYTFSVDEEIDDGELHGLPGRVFQQKLPEWTPNVQYYSSKEYPRLGHALHYNVRGTLALPVFEKSGKSCVGVVELVMTSQLVNYAPEVDKVCK ALEAVNLKSSEILDHPNPQICNEGRQNALAEILEILTVVCEAQKLPLAQTWVPCMHRSVLAHGGGLKKSCASFDGSCNGRVCMSVTDLAFYVVDAQVWGF RQACLEHHLQTGQGVAGRAFLSHNACFCRDITNFCKTQYPLVHYARMFGLHGCFSICLKSSHTGHNPATPEMTITSLNSFSLPRMRGSNRKSSWDHC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64530		NLP6	Plant regulator RWP-RK family ...		Lus10001811 [exp]	0	1
AT2G46380			Protein of unknown function (D...		Lus10003905 [exp]	2.8	0.7658
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10007346 [exp]	9.0	0.7439
AT1G72470		ATEXO70D1	exocyst subunit exo70 family p...		Lus10008126 [exp]	10.4	0.7873
AT2G29060	GRAS		GRAS family transcription fact...		Lus10016520 [exp]	20.9	0.7133
AT2G39920			HAD superfamily, subfamily III...		Lus10002714 [exp]	24.5	0.7132
AT1G05700			Leucine-rich repeat transmembr...		Lus10023463 [exp]	27.1	0.6575
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10008702 [exp]	30.3	0.7183
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10018246 [exp]	34.0	0.6957
AT1G13970			Protein of unknown function (D...		Lus10030425 [exp]	34.5	0.7023
AT3G48040		ROP10, ARAC8, A...	Arabidopsis RAC-like 8, RHO-re...		Lus10034876 [exp]	36.2	0.6987

Compare expression of checked genes

Lus10001811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.