Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10890 105 / 8e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003198 [exp] 735 / 0 AT4G10890 92 / 8e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G058050 [exp] 300 / 7e-95 AT4G10890 105 / 6e-24 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10382 [flax] [poplar] DUF2439 Protein of unknown function (DUF2439)
Representative CDS sequence Show only first row Show all	>Lus10001812 pacid=23154495 polypeptide=Lus10001812 locus=Lus10001812.g ID=Lus10001812.BGIv1.0 annot-version=v1.0 ATGGAGGCGATCGAGAGGAAGAAGAATCGATGGTGCGTCACTTACACCAAGCACATTAAGCAGAAGAGGAAATTTTATCAGGATGGTTTCTTAGATCACT TCGCCAACAAGGTTGTGCTGCTCGATGAATCTGAAAAGCTACTCGAATGCAAAGTACTCAAGGACGAAGATAACATTAGCTCCGGGGCGTCGCTGACTTT CAATTCTTATCTCGTCGACGTCGGAGATCCGGAAGGTGCTCATGCGCCGGTTCCTGGGAGGGATAAGAAGAAACAGGAGCGTGCTCCTGGTTTAATCCAT CGGCAGAAGTTCAGAAGTCCTTCAATTAGTTCCGGTAACGAGAATATTACTGCGAGGAACAACGTCCGTAGGAATGATTTAAGCCCATCGCACAAGATCA TTAGTGAGTTCAGGAAGTCTGAGCTGCAAAAGTTCAAGGCACCGAAGAATGCTAAAGATACGGCTGCTAAACTTGCTCAAACAGAGTGGCAGGTCTTGTA TACTACTCAAGTTTCTAAAAAGGCCAAGACGTACCATGATGGCTTCTTGTGGGTAGCTAACTCTGGATCCCTTCAGAGACAGATTATGCTGTATGATACG AGCAGGAAGTTGTTGACTAGCAGATTTCTTAAGAAAGATGAAGTAGTAGCATCTGGTGGATCACTGTCAATGGATGGGCATTTAGTTGACATTGGTGAGG CTGTGGAAGATCGTTCGCCTCTAGTGAATGTGCCTGACGAGCAAAGAGAGTTCTATGCTAATAAGAATACCAAAATGATGCATGGAGGACAGAACTGTTC TAAAAGCGGCCCCATTTATGTAGAAGATGTGAAAGGGAGTGATGGTCAGAAGCTTGAAGAGGCTGTGTCGAATGCAAATCAAACTTCACATACTATAACA GAATGGGAGGTTATGTACACTTCACAAATGACTCAAAAAGCCAAAACGTACCATGACGGATTTCTGAAACTTGAAACCCGTGGATCCCTTGGGAGGCAGG TCAAGCTGTACGATGCAAGCTGGAATGATTTAGAAAGCAGGCACCTCAAGAAAGATGAACGAATAAGTTCCGGTGGATCAATAGCATTTTGTGCCCATCT GGTTGATGTTGGAGAGCTTAAAGGAGACAATCAACTTCCACAAGATTCAAATGCTCCTGAAAATGATTCCAATATTAGCCACAAACCAGATGGAGTTCAT AATGCCCGTCTTAGATCCAACAATTATAACGCAAAAGGTATGTTGAATGTGTTTGATGAAGCCAAGCCATTTCTTTGTCTTTGTAAATTGACGAGCCAGA GACTGAACCCTTATGAAATTGCTTCTGTGCTCATAACAGGAAATTCACAGGTTGATGATTTACCAAAGAAAGTTGATTCCAATTCAAGCAGCCTGATTAA ATCAGAGAGGATCAAGTTCGTTGAGACCGTTTCTAAAAACCAACCCTTGCGTGATGATGCTACTGCCAAACGGAGTCGGCTCGTTAGTGGCACTGAAGAT AGCCATAGCAGCCAGAAGTATGATCTGGAAATGCAAGAAACAGCCACCAAAACCAGTGATGAAGATTTCCTCCCCACCTCCGAGACTAGAGATGGCGAAA GCAATAGTTCTCAACCGCTGTTTACAGACAGCGAGGAACTGCCAAGTTTTGATCTTGGCTTTTGA
AA sequence Show only first row Show all	>Lus10001812 pacid=23154495 polypeptide=Lus10001812 locus=Lus10001812.g ID=Lus10001812.BGIv1.0 annot-version=v1.0 MEAIERKKNRWCVTYTKHIKQKRKFYQDGFLDHFANKVVLLDESEKLLECKVLKDEDNISSGASLTFNSYLVDVGDPEGAHAPVPGRDKKKQERAPGLIH RQKFRSPSISSGNENITARNNVRRNDLSPSHKIISEFRKSELQKFKAPKNAKDTAAKLAQTEWQVLYTTQVSKKAKTYHDGFLWVANSGSLQRQIMLYDT SRKLLTSRFLKKDEVVASGGSLSMDGHLVDIGEAVEDRSPLVNVPDEQREFYANKNTKMMHGGQNCSKSGPIYVEDVKGSDGQKLEEAVSNANQTSHTIT EWEVMYTSQMTQKAKTYHDGFLKLETRGSLGRQVKLYDASWNDLESRHLKKDERISSGGSIAFCAHLVDVGELKGDNQLPQDSNAPENDSNISHKPDGVH NARLRSNNYNAKGMLNVFDEAKPFLCLCKLTSQRLNPYEIASVLITGNSQVDDLPKKVDSNSSSLIKSERIKFVETVSKNQPLRDDATAKRSRLVSGTED SHSSQKYDLEMQETATKTSDEDFLPTSETRDGESNSSQPLFTDSEELPSFDLGF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10890			unknown protein		Lus10001812 [exp]	0	1
AT3G19300			Protein kinase superfamily pro...		Lus10014071 [exp]	1.0	0.9544
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10005444 [exp]	3.7	0.9394
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10004945 [exp]	6.2	0.9495
AT5G62710			Leucine-rich repeat protein ki...		Lus10033104 [exp]	8.9	0.9393
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10017434 [exp]	9.6	0.9478
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10008176 [exp]	12.0	0.9460
AT1G68400			leucine-rich repeat transmembr...		Lus10031965 [exp]	13.5	0.9277
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10024019 [exp]	15.9	0.9323
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10038092 [exp]	16.2	0.9192
AT3G20260			Protein of unknown function (D...		Lus10033354 [exp]	16.6	0.9324

Compare expression of checked genes

Lus10001812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.