Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64520 282 / 3e-97 RPN12A regulatory particle non-ATPase 12A (.1) AT5G42040 157 / 1e-48 RPN12B regulatory particle non-ATPase 12B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003197 [exp] 355 / 2e-125 AT1G64520 335 / 5e-116 regulatory particle non-ATPase 12A (.1) Lus10032420 [exp] 320 / 1e-112 AT1G64520 340 / 2e-119 regulatory particle non-ATPase 12A (.1) Lus10023053 [exp] 320 / 1e-112 AT1G64520 339 / 6e-119 regulatory particle non-ATPase 12A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G142700 [exp] 301 / 2e-104 AT1G64520 427 / 5e-153 regulatory particle non-ATPase 12A (.1) Potri.001G088200 [exp] 298 / 3e-103 AT1G64520 414 / 5e-148 regulatory particle non-ATPase 12A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF03399 [flax] [poplar] SAC3_GANP SAC3/GANP family
Representative CDS sequence Show only first row Show all	>Lus10001813 pacid=23154491 polypeptide=Lus10001813 locus=Lus10001813.g ID=Lus10001813.BGIv1.0 annot-version=v1.0 ATGGATCCAAAGCTCACAGAGGTTTCTCAGTACTTCGAGCGATTCAAAGCTGCTTGTGTGAGGGGGGATATCGACTCATCGGCCAATTTTCTTTCCCAGC TCAAGGTCTCACTGACCAGCTTCCGAAGCCTTCCGCCTTTGTTTGAAAATACGCCAAATGCTGTCCAAGAATTGACTATAGCGAGAGATATATATGAGCA TGCGGTTCTTCTAAGTGTGAAGATGGAGGATCAGGATGCTTTTGAAAGAGACTTCTTTCAGTTGAAGCCATATTATACTGACGCCCGTAGCCGTCTCCCT CCATCTCCTCAAGAACATATGATATTGGGCCTCAACCTGTTGAGGCTCTTAGTTCAGAACAGAATTGCAGAATTCCACACCGAACTGGAACTGCTCCCGT CGAATTCTCTAGAGGATCCTTGCATCAAGCACGCAGTGGAGTTGGAGCAGTCATTCATGGAAGGAGCATACAACCGGGTGCTGAGTGCGAAGCAAACCGT CCCGAACAAGAGCTATGACTACTTCATGGATGTTTTGGCTAAAACAGTCAGGTAA
AA sequence Show only first row Show all	>Lus10001813 pacid=23154491 polypeptide=Lus10001813 locus=Lus10001813.g ID=Lus10001813.BGIv1.0 annot-version=v1.0 MDPKLTEVSQYFERFKAACVRGDIDSSANFLSQLKVSLTSFRSLPPLFENTPNAVQELTIARDIYEHAVLLSVKMEDQDAFERDFFQLKPYYTDARSRLP PSPQEHMILGLNLLRLLVQNRIAEFHTELELLPSNSLEDPCIKHAVELEQSFMEGAYNRVLSAKQTVPNKSYDYFMDVLAKTVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10001813 [exp]	0	1
AT5G56520			unknown protein		Lus10005700 [exp]	1.4	0.8522
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10000721 [exp]	3.7	0.8034
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10041803 [exp]	4.9	0.8205
					Lus10011965 [exp]	5.2	0.8424
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10030532 [exp]	5.5	0.8050
AT1G48170			unknown protein		Lus10011844 [exp]	7.1	0.8220
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10010129 [exp]	7.2	0.8385
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10018609 [exp]	12.1	0.8174
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10028352 [exp]	13.2	0.7767
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Lus10008988 [exp]	13.9	0.8438

Compare expression of checked genes

Lus10001813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.