Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10925 300 / 2e-104 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) AT4G23960 132 / 1e-39 F-box family protein (.1) AT4G23970 58 / 4e-11 unknown protein AT3G09250 54 / 1e-08 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023064 [exp] 342 / 7e-120 AT4G10925 333 / 5e-116 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10032407 [exp] 340 / 2e-119 AT4G10925 338 / 2e-118 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10003192 [exp] 253 / 8e-87 AT4G10925 187 / 2e-60 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10022605 [exp] 51 / 6e-08 AT3G09250 265 / 3e-91 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Lus10021504 [exp] 52 / 7e-08 AT3G09250 272 / 2e-92 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G089600 [exp] 308 / 3e-106 AT4G10925 347 / 2e-121 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Potri.003G141600 [exp] 307 / 3e-106 AT4G10925 350 / 9e-123 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Potri.016G105600 [exp] 55 / 4e-09 AT3G09250 281 / 4e-96 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2) Potri.006G093700 [exp] 55 / 6e-09 AT3G09250 266 / 5e-89 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001815 pacid=23154485 polypeptide=Lus10001815 locus=Lus10001815.g ID=Lus10001815.BGIv1.0 annot-version=v1.0 ATGGTAGTGGCTGCTGGCGAAAGAACCGGGGTGGAGAGGCAGTGTGGGGCGTCAATGATGGAGCAGCTGGTTCCTGAGATAACGACGCATGCGTTGAGTT ATTTGGATTACCCGAGTCTCTGCCGATTGTCCATGACTAACTCATTGATGCGTGAGGCTGCAAATGACGATAATGCGTGGAAAGCTCTATATCACAAGGA TTTTACATTGGAACAAGATACTGTTACGCCTGCTAATGGGTGGAAAGCTTACTATGCAGCTACCAGAGCCCTTGTCAATCTAAATGCTGAATTTTTCATC ATCATAGGAGAAAGTTCTATCGAAGAAATGGGCAATTTTTGGCTTAATGCAGATTATGTGAAGTGCATTCATGCATCAGGACAACTGTTTTCAGGGTACA ATGCTGTTATACAGAGTTTTCAGCTGGCCTTCAATTGGGCGGAAGGAGGAGTGCACTTTGAGGTACAAGATGTGCGGGTTCGCGTACTGACTGGCATGGC TTGGGTAACTATGAAAACCTATCTAGACATTGACAACGGACCCTTCCATGTAACTAACGTGTTTGAGTTCGTGAATGGGAGGTGGTACATGGTGCATCAT CACAGTTCAGCGGACCAGCAGGTGCTGATGCAACCGTAA
AA sequence Show only first row Show all	>Lus10001815 pacid=23154485 polypeptide=Lus10001815 locus=Lus10001815.g ID=Lus10001815.BGIv1.0 annot-version=v1.0 MVVAAGERTGVERQCGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMREAANDDNAWKALYHKDFTLEQDTVTPANGWKAYYAATRALVNLNAEFFI IIGESSIEEMGNFWLNADYVKCIHASGQLFSGYNAVIQSFQLAFNWAEGGVHFEVQDVRVRVLTGMAWVTMKTYLDIDNGPFHVTNVFEFVNGRWYMVHH HSSADQQVLMQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10925			Nuclear transport factor 2 (NT...		Lus10001815 [exp]	0	1
AT5G62950			RNA polymerase II, Rpb4, core ...		Lus10005329 [exp]	3.0	0.7535
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Lus10012389 [exp]	6.6	0.7283
					Lus10027225 [exp]	6.9	0.7586
AT3G52040			unknown protein		Lus10005332 [exp]	7.5	0.7383
AT3G05675			BTB/POZ domain-containing prot...		Lus10021269 [exp]	8.8	0.7581
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10032748 [exp]	10.7	0.7422
AT1G13570			F-box/RNI-like superfamily pro...		Lus10029077 [exp]	11.8	0.7477
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Lus10024313 [exp]	14.1	0.7042
AT5G47710			Calcium-dependent lipid-bindin...		Lus10039113 [exp]	17.0	0.7081
AT1G55170			unknown protein		Lus10041450 [exp]	20.5	0.7170

Compare expression of checked genes

Lus10001815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.