Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64480 272 / 2e-93 CBL8 calcineurin B-like protein 8 (.1) AT5G24270 254 / 4e-86 ATSOS3, CBL4, SOS3 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) AT4G26570 253 / 7e-86 ATCBL3 calcineurin B-like 3 (.1.2) AT4G33000 248 / 2e-83 SCABP8, ATCBL10, CBL10 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) AT5G55990 244 / 4e-82 ATCBL2, CBL2 calcineurin B-like protein 2 (.1) AT4G17615 236 / 3e-79 ATCBL1, SCABP5, CBL1 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) AT5G47100 233 / 5e-78 ATCBL9, CBL9 calcineurin B-like protein 9 (.1) AT4G16350 202 / 8e-66 SCABP2, CBL6 SOS3-LIKE CALCIUM BINDING PROTEIN 2, calcineurin B-like protein 6 (.1) AT4G01420 201 / 1e-65 CBL5 calcineurin B-like protein 5 (.1) AT4G26560 190 / 3e-61 CBL7 calcineurin B-like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003191 [exp] 419 / 2e-151 AT1G64480 264 / 2e-90 calcineurin B-like protein 8 (.1) Lus10023069 [exp] 354 / 9e-126 AT1G64480 263 / 6e-90 calcineurin B-like protein 8 (.1) Lus10032400 [exp] 352 / 2e-122 AT1G64480 263 / 3e-87 calcineurin B-like protein 8 (.1) Lus10022407 [exp] 283 / 2e-97 AT5G24270 331 / 1e-116 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10018108 [exp] 274 / 3e-94 AT5G24270 328 / 1e-115 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10011028 [exp] 248 / 9e-84 AT4G17615 359 / 5e-128 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) Lus10030252 [exp] 243 / 1e-81 AT5G24270 269 / 4e-92 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10015630 [exp] 242 / 4e-81 AT4G33000 322 / 3e-112 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Lus10037648 [exp] 238 / 2e-79 AT4G33000 328 / 2e-114 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G090200 [exp] 288 / 1e-99 AT1G64480 280 / 2e-96 calcineurin B-like protein 8 (.1) Potri.012G015100 [exp] 284 / 3e-98 AT5G24270 333 / 2e-117 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.015G013100 [exp] 283 / 1e-97 AT5G24270 324 / 6e-114 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.015G013200 [exp] 255 / 7e-87 AT5G24270 291 / 8e-101 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.001G371700 [exp] 255 / 1e-86 AT5G55990 418 / 9e-151 calcineurin B-like protein 2 (.1) Potri.003G037800 [exp] 253 / 2e-85 AT4G33000 286 / 5e-98 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Potri.016G003500 [exp] 251 / 4e-85 AT5G55990 420 / 2e-151 calcineurin B-like protein 2 (.1) Potri.011G094900 [exp] 251 / 7e-85 AT4G26570 408 / 6e-147 calcineurin B-like 3 (.1.2) Potri.006G002900 [exp] 251 / 8e-85 AT5G55990 414 / 5e-149 calcineurin B-like protein 2 (.1) Potri.003G084200 [exp] 240 / 9e-81 AT5G47100 375 / 2e-134 calcineurin B-like protein 9 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001816 pacid=23154494 polypeptide=Lus10001816 locus=Lus10001816.g ID=Lus10001816.BGIv1.0 annot-version=v1.0 ATGCTTGCATTTGGCCGATGTTTCTTCAAACAGAAGATCAAGAAGCAGACGCGGTATGAAGCTCATGCTCTTCTTGCTTCAGAGACACCATTCTCGATTA ATGAAATAGAGGCTCTGTACAACCTATTCAAGAAGCTAAGTAGCACTGTAAACGACGATGACTTGATTCACAAGGAAGATTTCCTATTTGCATTATTCAG AAGCACAAAGGCTAACAACCTATTTGCAGAGAGGGTATTTGCACTGTTTGATACAAAGCACAATGGAGTGATAGAGTTTAGCGAATTCGTTCATTCGTTA AGCATCTTCCATCCTCGAGCCCCTGTAGCTAACAAAATCTCATTTGCATTTCGGCTGTATGATCTGCACGAAACTGGGTTCATAGAACGCAATGAGGTGA AGGAGATGGTGCTGGCTATCCTGAGAGAATCTGACCTGACGCTTTCTGAAGAGTACATTGAGTCCATGGTTGATAAGACACTTGCAGAGGCAGATTTGAA TGGAGATGGAAAGATTGATGAACAGGAGTGGAAAGAACTCGTAGCAAAGCATCCATCTTTGATAAAAAATATGACTATTCCCTACCTAAGGGACTTAACT GTTACATTTCCAAGCTTTGTCCTGAACACTGAAGTTCCAGACTGA
AA sequence Show only first row Show all	>Lus10001816 pacid=23154494 polypeptide=Lus10001816 locus=Lus10001816.g ID=Lus10001816.BGIv1.0 annot-version=v1.0 MLAFGRCFFKQKIKKQTRYEAHALLASETPFSINEIEALYNLFKKLSSTVNDDDLIHKEDFLFALFRSTKANNLFAERVFALFDTKHNGVIEFSEFVHSL SIFHPRAPVANKISFAFRLYDLHETGFIERNEVKEMVLAILRESDLTLSEEYIESMVDKTLAEADLNGDGKIDEQEWKELVAKHPSLIKNMTIPYLRDLT VTFPSFVLNTEVPD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10001816 [exp]	0	1
AT3G07620			Exostosin family protein (.1)		Lus10008751 [exp]	1.0	0.9459
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Lus10000857 [exp]	4.2	0.9343
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10029406 [exp]	5.5	0.9393
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10004670 [exp]	5.7	0.9453
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10032857 [exp]	5.8	0.9246
AT3G07570			Cytochrome b561/ferric reducta...		Lus10016080 [exp]	6.7	0.9353
AT3G20840	AP2_ERF	PLT1	PLETHORA 1, Integrase-type DNA...		Lus10031831 [exp]	6.7	0.9335
AT3G49950	GRAS		GRAS family transcription fact...		Lus10014852 [exp]	6.9	0.9336
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	7.5	0.9360
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10033756 [exp]	8.7	0.9167

Compare expression of checked genes

Lus10001816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.