Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64450 85 / 6e-20 Glycine-rich protein family (.1) AT4G23930 67 / 4e-14 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003189 [exp] 207 / 4e-67 AT1G64450 158 / 7e-48 Glycine-rich protein family (.1) Lus10032397 [exp] 84 / 1e-21 AT4G23930 85 / 2e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10023071 [exp] 82 / 8e-20 AT1G64450 191 / 3e-62 Glycine-rich protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G141200 [exp] 96 / 5e-25 AT4G23930 176 / 3e-56 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.001G090400 [exp] 91 / 6e-23 AT4G23930 166 / 2e-52 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.006G112700 [exp] 39 / 0.0006 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001818 pacid=23154497 polypeptide=Lus10001818 locus=Lus10001818.g ID=Lus10001818.BGIv1.0 annot-version=v1.0 ATGTTGGCCCCGCCGTCACTTTCTGGCCCCGCCGTCACTTTCGGCCCCGGTGGATTAGTCCCTGCCGCCGGAGGAAACGGTGTCGAACCTGGGTTCGGGT CGGATGTCACAAAGTCCGCCGAAGAAGCCGTCATCGTGCCCGGGTCCGGTTCGGCAGGTTTAATACCTAGCGGAAACGGTGCCGTTCCAGGGTTTGGTTC GGCAGGAGTAATTCCTGGAGGAAACGGTGTCGTTCCGGGGTCGTCAGGAGTAATTTCTGGCGGAAACGGTGCCGTTCCGGGGTTTGGTTCGGCAGGAGTA ATTCCTGGCGGGAATAGTGTGGTTCCCGGGTTCGGGTCGGCAGGAGGAGCGGTGATTCCTCCACCGGGTAGTGGGCGGGTCGGGCCAACGATGGAGATCG AGTCGAGGATCCGGATGGTGGGACGGGTTCGGGTTCTGAATTTTTTCACGCACCACGTGGAGGCGAAGAGCGGATGCCGGGTAGCGATTGCGGTAACAGA TGGATCTGTGCTTGGATTTCATTGCTAG
AA sequence Show only first row Show all	>Lus10001818 pacid=23154497 polypeptide=Lus10001818 locus=Lus10001818.g ID=Lus10001818.BGIv1.0 annot-version=v1.0 MLAPPSLSGPAVTFGPGGLVPAAGGNGVEPGFGSDVTKSAEEAVIVPGSGSAGLIPSGNGAVPGFGSAGVIPGGNGVVPGSSGVISGGNGAVPGFGSAGV IPGGNSVVPGFGSAGGAVIPPPGSGRVGPTMEIESRIRMVGRVRVLNFFTHHVEAKSGCRVAIAVTDGSVLGFHC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64450			Glycine-rich protein family (....		Lus10001818 [exp]	0	1
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10015718 [exp]	2.8	0.8175
AT1G58170			Disease resistance-responsive ...		Lus10026176 [exp]	8.1	0.8019
AT2G28790			Pathogenesis-related thaumatin...		Lus10016572 [exp]	11.7	0.7723
AT2G22900			Galactosyl transferase GMA12/M...		Lus10019265 [exp]	12.2	0.7871
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10040503 [exp]	12.4	0.7928
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10011234 [exp]	17.0	0.7489
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Lus10005073 [exp]	17.3	0.7906
AT5G63380			AMP-dependent synthetase and l...		Lus10002791 [exp]	19.9	0.7635
AT4G11350			Protein of unknown function (D...		Lus10007923 [exp]	21.9	0.7608
AT5G58300			Leucine-rich repeat protein ki...		Lus10029005 [exp]	22.4	0.7692

Compare expression of checked genes

Lus10001818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.