Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10955 431 / 5e-152 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G05260 390 / 1e-135 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G24230 330 / 5e-112 Lipase class 3-related protein (.1) AT5G24180 263 / 1e-85 Lipase class 3-related protein (.1) AT5G24220 259 / 5e-84 Lipase class 3-related protein (.1) AT5G24200 224 / 5e-71 alpha/beta-Hydrolases superfamily protein (.1) AT5G24210 166 / 3e-48 alpha/beta-Hydrolases superfamily protein (.1) AT5G50890 161 / 8e-46 alpha/beta-Hydrolases superfamily protein (.1) AT5G24190 139 / 4e-39 Lipase class 3-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003188 [exp] 666 / 0 AT4G10955 456 / 7e-162 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10023072 [exp] 569 / 0 AT4G10955 441 / 2e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10018097 [exp] 358 / 4e-123 AT5G24230 357 / 2e-122 Lipase class 3-related protein (.1) Lus10022416 [exp] 265 / 7e-88 AT5G24230 268 / 7e-89 Lipase class 3-related protein (.1) Lus10031455 [exp] 161 / 3e-46 AT5G50890 478 / 4e-169 alpha/beta-Hydrolases superfamily protein (.1) Lus10001506 [exp] 154 / 2e-43 AT5G50890 469 / 1e-165 alpha/beta-Hydrolases superfamily protein (.1) Lus10020755 [exp] 149 / 3e-41 AT5G50890 494 / 5e-175 alpha/beta-Hydrolases superfamily protein (.1) Lus10007331 [exp] 142 / 8e-39 AT5G50890 487 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1) Lus10032396 [exp] 0 / 1 AT4G10955 206 / 3e-102 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G090500 [exp] 519 / 0 AT4G10955 472 / 9e-168 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G141100 [exp] 506 / 0 AT4G10955 464 / 7e-165 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G204100 [exp] 167 / 3e-48 AT5G50890 537 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G058100 [exp] 161 / 5e-46 AT5G50890 550 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10001819 pacid=23154496 polypeptide=Lus10001819 locus=Lus10001819.g ID=Lus10001819.BGIv1.0 annot-version=v1.0 ATGGAATCTGAGAGGGAAGACTTTCACCTCTCAGGACCATTGCACTTAACTTTTGTTGATTGGTCTGATGCGAACCACAGAAGATCCGTCGCTGCTAGCT TAGTTCAGAGCGTTTACATCCTAGAGTGTGACCGCCAGCTTAACCGTGAACATCCGAAAGCTCTAGCTCCACCATGGTGGGAGTTTTTCCATTTCAAGCT GCTCCGCAACCTCGTAGACGATGTGGATTTCTGCATCTTTGGTGCCGTGTTCGAATACAAACCTCCAACACCTCACAGTAATCATCACTCCTTGGATGCT AGCCCCCTGTACGTGATCGCCTTCCGTGGAACCTTGACCAAGCCTGGTTCATTTGCACGGGACATCGAGCTGGATCTCCATGTCATCAGGAACGGACTCC ACGAGACGTCCCGTTTCGAGATTGCAATGCAGGCAGTTCGAAACATGGTTGCTACCGTAGGCGATTCGAATGTCTGGTTAGCCGGACACTCTCTTGGAGC AGCCATGGCAATGCTTGCTGGAAAGACCATGGCCAAATTGAACAACAATTTCCTCCAAGCGTTCTTATTCAACTCGCCGTTCTTGTCAGCACCGATTGAG AGAATCAAGGACAAGCAAGTCAAACACGGGATCAGGATAGCCGGGAGTGTGATAACAGCAGGACTCGCATTCGCGTCGAAGATAAAGAACAACAATCAAA ATCACGTGAGTCGGTCTGTGGATCCGTTTGTGGCGCTCTCATCGTGGATCCCATGCCTGTTTGTGAACCCGGGGGATCCCATCTGCTCGGAGTACGTTGG CTACTTCGAGCATAGGAAGAAGATGGACGAGATTGGAATCGGAGCGATCGAGAAGCTGGCAACTCAGAACTCGCTGGGAGGTCTTCTGATGGGGAGGGAT TCGGAGCCTCTCCACCTGATTCCATCGGCCATTCTGGCGGTCAACTCGAGGCCTTCACAGGATTTGAAGGAAGCTCATGGGATTCATCAATGGTGGAGGC CTGATTTGCAGCTGCAGTCCCAGCTCTACAAGTACAACTAG
AA sequence Show only first row Show all	>Lus10001819 pacid=23154496 polypeptide=Lus10001819 locus=Lus10001819.g ID=Lus10001819.BGIv1.0 annot-version=v1.0 MESEREDFHLSGPLHLTFVDWSDANHRRSVAASLVQSVYILECDRQLNREHPKALAPPWWEFFHFKLLRNLVDDVDFCIFGAVFEYKPPTPHSNHHSLDA SPLYVIAFRGTLTKPGSFARDIELDLHVIRNGLHETSRFEIAMQAVRNMVATVGDSNVWLAGHSLGAAMAMLAGKTMAKLNNNFLQAFLFNSPFLSAPIE RIKDKQVKHGIRIAGSVITAGLAFASKIKNNNQNHVSRSVDPFVALSSWIPCLFVNPGDPICSEYVGYFEHRKKMDEIGIGAIEKLATQNSLGGLLMGRD SEPLHLIPSAILAVNSRPSQDLKEAHGIHQWWRPDLQLQSQLYKYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10001819 [exp]	0	1
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10025128 [exp]	2.4	0.8700
					Lus10003631 [exp]	2.6	0.8596
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10027279 [exp]	2.8	0.8812
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10012689 [exp]	4.0	0.8543
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10013120 [exp]	4.2	0.8600
AT3G57810			Cysteine proteinases superfami...		Lus10037002 [exp]	4.5	0.8666
AT1G75210			HAD-superfamily hydrolase, sub...		Lus10032712 [exp]	4.9	0.8775
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10016667 [exp]	6.5	0.8427
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10034716 [exp]	11.4	0.8496
AT4G27220			NB-ARC domain-containing disea...		Lus10008516 [exp]	14.8	0.8425

Compare expression of checked genes

Lus10001819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.