Plant FIBer expression Database

Lus10001821 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G54855 219 / 8e-75 Pollen Ole e 1 allergen and extensin family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003874
[exp]
266 / 2e-93 AT5G54855 213 / 2e-72 Pollen Ole e 1 allergen and extensin family protein (.1)
Lus10019622
[exp]
233 / 8e-80 AT5G54855 207 / 8e-70 Pollen Ole e 1 allergen and extensin family protein (.1)
Lus10008615
[exp]
38 / 0.0009 AT4G08685 166 / 3e-53 Pollen Ole e 1 allergen and extensin family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G137100
[exp]
223 / 2e-76 AT5G54855 238 / 3e-82 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0287 Transthyretin PF01190 Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence
>Lus10001821 pacid=23154501 polypeptide=Lus10001821 locus=Lus10001821.g ID=Lus10001821.BGIv1.0 annot-version=v1.0
ATGGTTGTTGTCCTTCTGGTGACCACCGGTGTTCAAGCTTGGACTGGTGAAATCCGCGGGAGAGTGGTTTGTGATGTGTGCGGCGATTCTTCCATTGGAC
CTGAGGATCACGTTCTGGAAGGTGCGGAAGTGGCTGTTCTGTGCATAACAAAGTCAGGGGAAGTTGTCAACTACCAAGCATTTACAAACGCCAAAGGGAT
TTACACCGTCGCGGAAACTATGCCAGAGAGTGACCGTTGGGACGCATGCCTGGCGAGACCAATAAGCAGCTTCCATGATCACTGCAACCATCTGGGGGCT
AGTAGCAAAGGAGTGAAGTTCAGTTACAAAAAGCCATCTGGGTATTCCCACAGCGTCAGACCGTTTGTTTACCGGCATTCCAGCCCGCCGTCATACTGCT
TGTAG
AA sequence
>Lus10001821 pacid=23154501 polypeptide=Lus10001821 locus=Lus10001821.g ID=Lus10001821.BGIv1.0 annot-version=v1.0
MVVVLLVTTGVQAWTGEIRGRVVCDVCGDSSIGPEDHVLEGAEVAVLCITKSGEVVNYQAFTNAKGIYTVAETMPESDRWDACLARPISSFHDHCNHLGA
SSKGVKFSYKKPSGYSHSVRPFVYRHSSPPSYCL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G54855 Pollen Ole e 1 allergen and ex... Lus10001821
[exp]
0 1
AT3G12800 SDRB, DECR short-chain dehydrogenase-redu... Lus10031170
[exp]
2.0 0.8805
AT3G12800 SDRB, DECR short-chain dehydrogenase-redu... Lus10031746
[exp]
2.2 0.8807
AT3G17020 Adenine nucleotide alpha hydro... Lus10016900
[exp]
3.2 0.8592
AT1G17180 ATGSTU25 glutathione S-transferase TAU ... Lus10019480
[exp]
3.5 0.8741
AT1G07080 Thioredoxin superfamily protei... Lus10042270
[exp]
3.5 0.8799
AT4G25670 unknown protein Lus10038842
[exp]
4.9 0.8441
AT1G11440 unknown protein Lus10007616
[exp]
4.9 0.8356
AT5G62200 Embryo-specific protein 3, (AT... Lus10031684
[exp]
5.5 0.8362
AT5G08139 RING/U-box superfamily protein... Lus10023235
[exp]
6.5 0.8580
AT5G49940 ATCNFU2, NFU2 CHLOROPLAST-LOCALIZED NIFU-LIK... Lus10015481
[exp]
7.5 0.8502

Lus10001821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.