Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10960 615 / 0 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT4G23920 603 / 0 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G64440 591 / 0 REB1, RHD1, UGE4 UDP-GLUCOSE 4-EPIMERASE, ROOT HAIR DEFECTIVE 1, ROOT EPIDERMAL BULGER1, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G63180 486 / 2e-173 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1) AT1G12780 485 / 3e-173 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT1G30620 260 / 6e-84 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G44480 259 / 3e-83 DUR DEFECTIVE UGE IN ROOT, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G20460 256 / 3e-82 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G34850 168 / 2e-50 MEE25 maternal effect embryo arrest 25, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G00110 97 / 5e-22 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003875 [exp] 714 / 0 AT4G10960 616 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10023074 [exp] 626 / 0 AT4G10960 585 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10032394 [exp] 523 / 0 AT4G10960 494 / 8e-178 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10002246 [exp] 470 / 3e-167 AT1G12780 592 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10029572 [exp] 466 / 5e-164 AT1G12780 585 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10038423 [exp] 254 / 9e-82 AT1G30620 682 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10003496 [exp] 221 / 5e-69 AT1G30620 656 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10013107 [exp] 217 / 2e-67 AT1G30620 652 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10016640 [exp] 100 / 7e-23 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G090700 [exp] 630 / 0 AT4G10960 607 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G140900 [exp] 613 / 0 AT4G10960 606 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G123700 [exp] 492 / 7e-176 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Potri.011G156100 [exp] 253 / 4e-81 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G022000 [exp] 249 / 1e-79 AT1G30620 676 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G459700 [exp] 249 / 2e-79 AT1G30620 730 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.016G020000 [exp] 247 / 5e-79 AT1G30620 670 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G320000 [exp] 91 / 5e-20 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.003G114600 [exp] 89 / 3e-19 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.002G146500 [exp] 88 / 4e-19 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10001822 pacid=23154487 polypeptide=Lus10001822 locus=Lus10001822.g ID=Lus10001822.BGIv1.0 annot-version=v1.0 ATGGCTAAAAACGTTCTAGTCACCGGCGGTGCCGGCTACATTGGAAGCCACACCGTCCTTCAGTTGCTCTTAGGCGGTTACAGCGCTGTCGTCGTTGACA ACCTTGACAACTCCAATCAACTCGCTCTTCACCGTGTCAAGGAACTCGCCGGTCACCACTCCAAGAACCTCTCCTTCCACCAGTTTGATCTAAGGGACAA ACCTGCTCTGGAGAAAGTTTTCGAGGGGACAAAATTTGATGCTGTCATCCACTTTGCTGGACTGAAAGCAGTTGGCGAGAGTGTTGAGAAGCCGTTGATG TATTACAACAACAATCTCATTGCAACCATTACTTTGCTGGAAGTGATGGCCGCCCATGGATGCAAGAATCTTGTGTTCTCATCGTCAGCCACTGTTTACG GCTGGCCTAAGGAAGTTCCATGCACGGAAGAATTCCCCATCAATGCTGCGAATCCCTATGGCCGCACCAAGCTTTTCATTGAAGAAATATGCCGGGATGT CTACGCCTCGGACTCTAAATGGAGAATCATTTTGCTGAGGTATTTCAATCCTGTTGGTGCACATCAAAGTGGGAAGATTGGTGAGGATCCACGTGGGATC CCAAACAATCTCATGCCGTATGTGCAGCAAGTTGCTGTTGGAAGAAGATCTCATCTGACAGTCTTCGGGACTGACTACAAAACCAAGGATGGAACTGGGG TACGCGACTATATTCATGTTGTTGATTTGGCCGATGGTCATATTGCTGCACTGCGTAAGCTCGATGAACCTAATATTGGATGCGAGGTATACAACTTGGG AACAGGAAAGGGAACATCAGTATTGGAGATGGTTGCAGCATTTGAGAAGGCATCCGGAAAGAAAATACCTCTAGTAATGGCTGGACGACGACCAGGGGAT GCTGAAATGGTATACGCATCAACAACCAAGGCAGAACGTGAATTGAATTGGAAGGCCACATACGGAATCGAAGAAATGTGCAGGGACCAATGGAACTGGG CAAGCAAGAACCCTTATGGTTACGAGTCGTCGCCTGATATCCCGAATGGAACCAAAAAGTAA
AA sequence Show only first row Show all	>Lus10001822 pacid=23154487 polypeptide=Lus10001822 locus=Lus10001822.g ID=Lus10001822.BGIv1.0 annot-version=v1.0 MAKNVLVTGGAGYIGSHTVLQLLLGGYSAVVVDNLDNSNQLALHRVKELAGHHSKNLSFHQFDLRDKPALEKVFEGTKFDAVIHFAGLKAVGESVEKPLM YYNNNLIATITLLEVMAAHGCKNLVFSSSATVYGWPKEVPCTEEFPINAANPYGRTKLFIEEICRDVYASDSKWRIILLRYFNPVGAHQSGKIGEDPRGI PNNLMPYVQQVAVGRRSHLTVFGTDYKTKDGTGVRDYIHVVDLADGHIAALRKLDEPNIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMAGRRPGD AEMVYASTTKAERELNWKATYGIEEMCRDQWNWASKNPYGYESSPDIPNGTKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10001822 [exp]	0	1
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10003875 [exp]	1.0	0.9341
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10028175 [exp]	5.9	0.8840
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10004581 [exp]	6.0	0.9170
AT1G73760			RING/U-box superfamily protein...		Lus10013497 [exp]	7.3	0.8250
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020939 [exp]	7.9	0.8768
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10007095 [exp]	8.0	0.8132
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10037377 [exp]	8.3	0.8953
AT1G27930			Protein of unknown function (D...		Lus10012537 [exp]	9.7	0.8868
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10028848 [exp]	10.0	0.8944
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10007942 [exp]	10.5	0.7924

Compare expression of checked genes

Lus10001822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.