Plant FIBer expression Database

Lus10001823 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G64430 655 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003876
[exp]
920 / 0 AT1G64430 679 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G090800
[exp]
743 / 0 AT1G64430 639 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Potri.003G140800
[exp]
732 / 0 AT1G64430 690 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
PFAM info
Representative CDS sequence
>Lus10001823 pacid=23154484 polypeptide=Lus10001823 locus=Lus10001823.g ID=Lus10001823.BGIv1.0 annot-version=v1.0
ATGACTCTCAACTTAGGCTCGACAACTCTAGCTCGCCTTCTTTACCCTGCTGCTCCTCCTCCTCCTCCTCAAGTCTCGAAGCTCCGTGACGCCTCTCTCC
CAACCAACGGCTGCACTTACACTCTCCTTTCTCTCCTTCTAGCCACCACCGCCTCCGTCGCCTCTTCCAGAGTCTTTAGAGCTAGAGCCTCGCTCAGTGA
TGGAGCCGCCGCCGACAACTTGTTCGACGACAATGCGCTGCTCGTCCGCGTATCTGCTGCCAAACAAGCCGACGAGGCTTTGGAGATTATCGCTGAGGCA
TCCAAGCGGAGTAGCGGTGTCGTAGGCGTTTCCGATTGTTGCTCGATTATAAACGCCGCTCTTGATCGCAACAATTCGGAGCTGGCCTTGTCTGTACTCT
ATGCAATGCGTTCGAGTTTCGATCAAGCTGTTGGTGAGAATGGTGGTTCAATTCAGAGATGGAAATGGTCGAGGCCGAACGTTAGTGTCTATACGTCGTT
AGTGCGAGGACTTGCGGCGTCATTGAAAGTATCGGATGCCCTCAAAACGATTGAATACATTTGTCAAGTCGGAGTCTCTCCTAGTGAAGAGGTTTCTCAA
ATTAGCCGTGTGATCCAATTTGGCGAGGTTTTGCAGGTGCCTTTCGGAAAGGTTATTAGGTGTCCAACTTGTTTTGTTGCTGTTGCAGTTGCACAACCAC
AGCATGGTGTACAGATTGCTTCTTGTTCAAAATGCCGCTATCAGTATGAGCTTGTGTCTGGAGACATAACTAGCATCAGCTCTGAAGAAATCAGGTGGGT
GTACAAATGTGAACTCCCACCTGCTGAACGCAGCATGGATCTTCCTGTGTGGGAGAGGGGGCTAAGGTTTCTGCAAATATTGAAGCAAAGAACTCCTGCT
GCTGTTCACTCAATTGTGGTACAGACACCATCTGGTACTGCACGTACACAAAGGTTTGCTACTGAAACAGTCGACCTCCCAGCCCAAGAAGGAGAAAGGG
TGACCATTGCATCAGCTGCCCCATCCTGCGTATACAGAAGTGTGGGACCCTTAAAATTTACTCCAAAGGCCTCCAGCGTCTATCCTGGGGAGCCTTTGTG
CCTGAGTAACCATGGGAATGGTCGGGAAACACCACTGTTAAGACCTCCTGCAAAAGATGGGAGGCTATCCTTGCTTAGTCCTTCTGTCCTTATTCCTCTT
GCGGCGGTTCTTGTAACTGGAGATGTTGCCTCAGGAATGGTCGACCCCAGTTTACCTCAGTTACTTTCAATTGCTGCGTTTACATCTATTAGTGCTGGAG
CTGCCATAAATACCCTGGTTTTGCCCCAGCTGAATCAACTTCCTCAGAAGACAGCTGATGCAATCTCTATTAAACAGCAACTGTTGTCTCAATATGACGT
CCTTCAGTCTCGCATCAAGGACCTGAAAGAATCTGCTGAAAAGGAGATTTGGATGCTAGCTCGCATGTGCCAGCTGGAGAACAAAATTTTTGCTGTAGGA
GAACCAACTTATCGAGCCAGGAGAACTAGAGTAAAACAAGTCCGAGAAGGATTGGAAGATTCCCTCAAGGGACGTATTGAACTCATTGACAGCTATGCTA
GAATTTCCTCAATGATTGAAATTGAGGTGGAACTGGACTCTGATGTCCTTGCTGCTGAAGCAGTAAGCAATGTGGAAAGCATTGCTGAACAGATCCAACA
GATCATGGAGCTGGAAGATCTTGAAGAGAGATGGAGGCTGCAAGCAGAAGCAAACGATGAAGCCGAAAGACTCCTTTCTCAAACAGCTCCCATTGAATGA
AA sequence
>Lus10001823 pacid=23154484 polypeptide=Lus10001823 locus=Lus10001823.g ID=Lus10001823.BGIv1.0 annot-version=v1.0
MTLNLGSTTLARLLYPAAPPPPPQVSKLRDASLPTNGCTYTLLSLLLATTASVASSRVFRARASLSDGAAADNLFDDNALLVRVSAAKQADEALEIIAEA
SKRSSGVVGVSDCCSIINAALDRNNSELALSVLYAMRSSFDQAVGENGGSIQRWKWSRPNVSVYTSLVRGLAASLKVSDALKTIEYICQVGVSPSEEVSQ
ISRVIQFGEVLQVPFGKVIRCPTCFVAVAVAQPQHGVQIASCSKCRYQYELVSGDITSISSEEIRWVYKCELPPAERSMDLPVWERGLRFLQILKQRTPA
AVHSIVVQTPSGTARTQRFATETVDLPAQEGERVTIASAAPSCVYRSVGPLKFTPKASSVYPGEPLCLSNHGNGRETPLLRPPAKDGRLSLLSPSVLIPL
AAVLVTGDVASGMVDPSLPQLLSIAAFTSISAGAAINTLVLPQLNQLPQKTADAISIKQQLLSQYDVLQSRIKDLKESAEKEIWMLARMCQLENKIFAVG
EPTYRARRTRVKQVREGLEDSLKGRIELIDSYARISSMIEIEVELDSDVLAAEAVSNVESIAEQIQQIMELEDLEERWRLQAEANDEAERLLSQTAPIE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G64430 Pentatricopeptide repeat (PPR)... Lus10001823
[exp]
0 1
AT1G64430 Pentatricopeptide repeat (PPR)... Lus10003876
[exp]
1.0 0.9610
AT1G54350 ABCD2 ATP-binding cassette D2, ABC t... Lus10001839
[exp]
1.4 0.9572
AT1G03160 FZL FZO-like (.1.2) Lus10014666
[exp]
3.0 0.9539
AT1G04620 HCAR 7-hydroxymethyl chlorophyll a ... Lus10032607
[exp]
3.2 0.9418
AT5G02830 Tetratricopeptide repeat (TPR)... Lus10015053
[exp]
3.5 0.9497
AT5G39980 Tetratricopeptide repeat (TPR)... Lus10041429
[exp]
5.7 0.9113
AT1G56500 haloacid dehalogenase-like hyd... Lus10029840
[exp]
6.0 0.9383
AT1G03160 FZL FZO-like (.1.2) Lus10000656
[exp]
9.2 0.9056
AT4G14605 Mitochondrial transcription te... Lus10032061
[exp]
9.4 0.9250
AT1G53250 unknown protein Lus10028136
[exp]
9.5 0.9154

Lus10001823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.