Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23900 347 / 2e-122 Nucleoside diphosphate kinase family protein (.1) AT4G11010 338 / 5e-119 NDPK3 nucleoside diphosphate kinase 3 (.1) AT4G23895 347 / 7e-119 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3) AT4G09320 186 / 8e-60 NDPK1 Nucleoside diphosphate kinase family protein (.1) AT5G63310 183 / 5e-58 NDPK1A, NDPKIAIA, NDPK2, ATNDPK2 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) AT1G17410 89 / 6e-22 Nucleoside diphosphate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003878 [exp] 399 / 1e-142 AT4G23900 362 / 6e-128 Nucleoside diphosphate kinase family protein (.1) Lus10032392 [exp] 325 / 4e-114 AT4G11010 328 / 1e-115 nucleoside diphosphate kinase 3 (.1) Lus10023076 [exp] 220 / 3e-71 AT4G23900 189 / 4e-59 Nucleoside diphosphate kinase family protein (.1) Lus10024286 [exp] 190 / 1e-61 AT4G09320 272 / 3e-95 Nucleoside diphosphate kinase family protein (.1) Lus10003844 [exp] 186 / 5e-60 AT4G09320 264 / 7e-92 Nucleoside diphosphate kinase family protein (.1) Lus10014787 [exp] 186 / 8e-59 AT5G63310 301 / 2e-104 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Lus10017931 [exp] 186 / 9e-59 AT5G63310 301 / 3e-104 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G091001 [exp] 361 / 6e-128 AT4G23900 335 / 2e-117 Nucleoside diphosphate kinase family protein (.1) Potri.003G140600 [exp] 360 / 1e-127 AT4G23900 332 / 2e-116 Nucleoside diphosphate kinase family protein (.1) Potri.014G049900 [exp] 193 / 4e-63 AT4G09320 242 / 2e-83 Nucleoside diphosphate kinase family protein (.1) Potri.012G093800 [exp] 193 / 1e-61 AT5G63310 281 / 1e-96 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Potri.002G138800 [exp] 189 / 3e-61 AT4G09320 271 / 5e-95 Nucleoside diphosphate kinase family protein (.1) Potri.003G068100 [exp] 76 / 4e-17 AT1G17410 229 / 1e-77 Nucleoside diphosphate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00334 [flax] [poplar] NDK Nucleoside diphosphate kinase
Representative CDS sequence Show only first row Show all	>Lus10001824 pacid=23154504 polypeptide=Lus10001824 locus=Lus10001824.g ID=Lus10001824.BGIv1.0 annot-version=v1.0 ATGAGCTCTCACATTTTCAGATCTGCTTCCAGAGCCGCCAGGTCCCTCCTCTCCTCTGCTTCCAGGGGCTCTCGCTTTTACTCCGGGGGACGAGCGGCTG CTGTTCCGTTTAGAGGAAAGCTGCCACTCTTTGCTTCGGCTTATGAAAACACAGGTTCTGCAAATGTTCCGCAATGGATCTCTGGAGCCCTTGCGATTCC CATGGCAACTTACATGCTCCAAGAACAGGAGGCCTGTGCTGGAGAGCTGGAGCGCACTTTCATTGCTATCAAGCCCGACGGTGTGCAGAGAGGATTGGTG TCAGAAATCATTTCCCGTTTCGAGCGCAAAGGTTTCAAGCTTGTGGCGATCAAGATAGTGGTTCCATCAAAGGACTTCGCTCAAAAGCACTATCATGACC TGAAAGAGAGACCATTTTTCAACGGTCTGTGCAACTTCCTTAGCTCTGGTCCTGTTGTGGCCATGGTCTGGGAAGGAGAAGGGGCGATCAAATATGGCAG GAAGCTGATTGGAGCTACCGATCCCCAGAAATCTGAACCTGGAACAATTAGAGGTGATCTGGCCGTGGTTGTTGGAAGGAACATCATTCATGGAAGTGAT GGCCCAGAAACCGCCAAGGACGAGATCAAGTTGTGGTTCAAGCCAGAAGAACTGGTTAGCTACACAAGCAATGCTGAGAAATGGATATACGGAAACAACT GA
AA sequence Show only first row Show all	>Lus10001824 pacid=23154504 polypeptide=Lus10001824 locus=Lus10001824.g ID=Lus10001824.BGIv1.0 annot-version=v1.0 MSSHIFRSASRAARSLLSSASRGSRFYSGGRAAAVPFRGKLPLFASAYENTGSANVPQWISGALAIPMATYMLQEQEACAGELERTFIAIKPDGVQRGLV SEIISRFERKGFKLVAIKIVVPSKDFAQKHYHDLKERPFFNGLCNFLSSGPVVAMVWEGEGAIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSD GPETAKDEIKLWFKPEELVSYTSNAEKWIYGNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23900			Nucleoside diphosphate kinase ...		Lus10001824 [exp]	0	1
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Lus10016545 [exp]	5.5	0.8164
AT2G28900		OEP16, ATOEP16-...	outer envelope protein 16, OUT...		Lus10040810 [exp]	6.8	0.8178
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10016667 [exp]	12.1	0.7908
AT3G60810			unknown protein		Lus10030273 [exp]	14.3	0.8260
					Lus10007473 [exp]	30.6	0.7463
					Lus10043166 [exp]	33.3	0.7348
AT5G08050			Protein of unknown function (D...		Lus10040515 [exp]	33.7	0.8001
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10039814 [exp]	36.1	0.7499
AT4G39530			Tetratricopeptide repeat (TPR)...		Lus10014452 [exp]	41.0	0.7087
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10003311 [exp]	45.3	0.7473

Compare expression of checked genes

Lus10001824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.