Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003879 [exp] 271 / 6e-92 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G205300 [exp] 42 / 0.0002 AT4G35280 236 / 2e-76 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001825 pacid=23154489 polypeptide=Lus10001825 locus=Lus10001825.g ID=Lus10001825.BGIv1.0 annot-version=v1.0 ATGAACACTGATAAGCAATCAACTACATCTACATCTACTGATGAACATGTCATCCCTCCAACTGCTGGTTCTGCTTGTGATGCTGCTGCTACTGGTGGTG ATGCTGGCAATGAAGTCCATCCTCCCACAGTTGTTGAAGATCTTACTCCTCCGAATATTGGCGGCAGATCTGCCTCTGCCACTGCTGCTAAAGGCAAAGG CAAAGTCGTGCAGGGAGAGGGTGCGGGAGACGAGGAAAATGAAACAGATGTTAATAATGCTGCTGCTGAAATGGCGCCGGAAGGGGAATCTGAGCCGATA ACGTTGAACACGGTGTTACTCTCGGGAATACCATCAATCATGAGGAGGAAGCTTCTGAAAGGAGTCCCGTCGCCATGTGTGGTGTGCCAGAAGGCTTTCC GATCATTCTCAGCGCTCATCCACCACTTGCGTACCCATGGCGAGGACGTCTTTCGACGGATCACCGTCACCTATGATGTCCGCGCAATTGCGCCCATCAC TGAGCTTGAACACAATGGGGAAGCTGCCGAAAATAAGGCACTCACCGGTGGCAATGAGGCAGTCGCCCGAAACAAGACACTCACTAGTGACAGTGAAGAA GCTGTTCCGAGTAAGACACTCACCGGCGACAAGGAGGAAACCGTGCGAAATGAGATACTCATTGGTGTACCTGCTGGCCCTTCTCTCCAACGGGACAATA TGGATCTGGATTTCGACCTTAACCTCCCTCTGCCCGAAGCTCAAGAAGATTGA
AA sequence Show only first row Show all	>Lus10001825 pacid=23154489 polypeptide=Lus10001825 locus=Lus10001825.g ID=Lus10001825.BGIv1.0 annot-version=v1.0 MNTDKQSTTSTSTDEHVIPPTAGSACDAAATGGDAGNEVHPPTVVEDLTPPNIGGRSASATAAKGKGKVVQGEGAGDEENETDVNNAAAEMAPEGESEPI TLNTVLLSGIPSIMRRKLLKGVPSPCVVCQKAFRSFSALIHHLRTHGEDVFRRITVTYDVRAIAPITELEHNGEAAENKALTGGNEAVARNKTLTSDSEE AVPSKTLTGDKEETVRNEILIGVPAGPSLQRDNMDLDFDLNLPLPEAQED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10001825 [exp]	0	1
AT5G15110			Pectate lyase family protein (...		Lus10030791 [exp]	3.6	0.9830
AT2G41970			Protein kinase superfamily pro...		Lus10017242 [exp]	3.9	0.9467
					Lus10018446 [exp]	5.1	0.8937
AT5G65090		DER4, MRH3, BST...	DEFORMED ROOT HAIRS 4, BRISTLE...		Lus10041708 [exp]	5.5	0.8589
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10016437 [exp]	5.6	0.8578
					Lus10029261 [exp]	5.7	0.9695
AT5G02220			unknown protein		Lus10001570 [exp]	6.5	0.7937
AT5G56990			unknown protein		Lus10029528 [exp]	6.9	0.9695
					Lus10003825 [exp]	8.0	0.9695
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	8.9	0.9695

Compare expression of checked genes

Lus10001825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.