Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23890 221 / 3e-72 NdhS, CRR31 NADH dehydrogenase-like complex S, CHLORORESPIRATORY REDUCTION 31, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003880 [exp] 409 / 7e-147 AT4G23890 247 / 1e-82 NADH dehydrogenase-like complex S, CHLORORESPIRATORY REDUCTION 31, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G091300 [exp] 248 / 3e-83 AT4G23890 211 / 6e-69 NADH dehydrogenase-like complex S, CHLORORESPIRATORY REDUCTION 31, unknown protein Potri.003G140400 [exp] 242 / 5e-81 AT4G23890 224 / 1e-73 NADH dehydrogenase-like complex S, CHLORORESPIRATORY REDUCTION 31, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0010 [flax] [poplar] SH3 PF11623 [flax] [poplar] NdhS NAD(P)H dehydrogenase subunit S
Representative CDS sequence Show only first row Show all	>Lus10001826 pacid=23154498 polypeptide=Lus10001826 locus=Lus10001826.g ID=Lus10001826.BGIv1.0 annot-version=v1.0 ATGGCATCATCTTCAATCACTCTCCAAACCCTACATCTCAGATCCAACTTCCCCCTAGGGAAAACAACTCCCAGCATCAAGCCCTCCTACTCCTCTTTGG TTCCTAGAGATTCAAGACTAAAGCATATCAAAACATACGCCAAGTTCAACCTCTCGGAGCTCCTGGGAGGGAGAGGACTCTGCAACGGAGAGGAAGGCCT TGAGAAGTTGCTCCAGCAAGATGTTGAACCACCTGCTGAAGGAGGAGAAGAACAAGCGAGTTCCGGCAGCCAGTTACCGGCTGCAGCAACGGAAGCTGTG CCGGAAGATGCATTTGACAAGGAACTAATGGGGCTCACAGGGGGGTTTCCTGGTGGGGAAAAGGGACTGCAGAAATTCATTGAAGAAAACCCACCACCAA GCAAGACAGACTCAGAAGAAGCCCTATCTATAACAACAAAGAAGAAGCCTAAAGCACCCCAACTGCCACTCCTGATGCCTGGTATGATTGCTGTGGTTAA AGACCCAAACAATCCATACTATATGTACTGCGGCATCATACAGAGGATCACAGATGGGAAAGCTGGGCTTCTTTTGGAAGGAGGTGTCTGGGATCGGTTG ATCACTTTCAGGCTCGAAGAACTCGAGCGCAGGGAGAAAGGTCCACCGGGAAAAAATCCCAGGTCTGTTATTCTAGAAAAGAAGCTTGAGAAAAAAGATT CACAGTCTGGTTGA
AA sequence Show only first row Show all	>Lus10001826 pacid=23154498 polypeptide=Lus10001826 locus=Lus10001826.g ID=Lus10001826.BGIv1.0 annot-version=v1.0 MASSSITLQTLHLRSNFPLGKTTPSIKPSYSSLVPRDSRLKHIKTYAKFNLSELLGGRGLCNGEEGLEKLLQQDVEPPAEGGEEQASSGSQLPAAATEAV PEDAFDKELMGLTGGFPGGEKGLQKFIEENPPPSKTDSEEALSITTKKKPKAPQLPLLMPGMIAVVKDPNNPYYMYCGIIQRITDGKAGLLLEGGVWDRL ITFRLEELERREKGPPGKNPRSVILEKKLEKKDSQSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23890		NdhS, CRR31	NADH dehydrogenase-like comple...		Lus10001826 [exp]	0	1
AT3G45050			unknown protein		Lus10041331 [exp]	1.4	0.9699
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016730 [exp]	4.5	0.9488
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10027729 [exp]	4.7	0.9513
AT5G53490			Tetratricopeptide repeat (TPR)...		Lus10007788 [exp]	5.3	0.9495
AT4G29590			S-adenosyl-L-methionine-depend...		Lus10040550 [exp]	6.9	0.9512
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10029752 [exp]	7.9	0.9394
AT2G26500			cytochrome b6f complex subunit...		Lus10011665 [exp]	8.1	0.9427
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10019290 [exp]	9.2	0.9361
AT5G27560			Domain of unknown function (DU...		Lus10029915 [exp]	9.5	0.9362
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Lus10005337 [exp]	11.2	0.9309

Compare expression of checked genes

Lus10001826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.