Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23850 910 / 0 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT4G11030 882 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G64400 874 / 0 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT1G49430 689 / 0 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT2G47240 614 / 0 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT5G27600 432 / 2e-143 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 413 / 7e-136 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT2G04350 315 / 5e-98 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G77590 289 / 2e-88 LACS9 long chain acyl-CoA synthetase 9 (.1) AT3G23790 129 / 4e-31 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032380 [exp] 1055 / 0 AT4G23850 1053 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10023089 [exp] 929 / 0 AT4G23850 959 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10023832 [exp] 707 / 0 AT1G49430 953 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10021021 [exp] 706 / 0 AT1G49430 955 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10032840 [exp] 597 / 0 AT2G47240 961 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10002414 [exp] 577 / 0 AT2G47240 932 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10029918 [exp] 431 / 2e-142 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 427 / 5e-141 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 425 / 3e-140 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G091900 [exp] 951 / 0 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.003G139700 [exp] 950 / 0 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 722 / 0 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.002G192400 [exp] 581 / 0 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.010G090200 [exp] 441 / 2e-146 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.013G021300 [exp] 426 / 1e-140 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.014G169400 [exp] 305 / 6e-94 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.002G084100 [exp] 284 / 2e-86 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.005G177500 [exp] 284 / 3e-86 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169600 [exp] 269 / 7e-82 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10001830 pacid=23154506 polypeptide=Lus10001830 locus=Lus10001830.g ID=Lus10001830.BGIv1.0 annot-version=v1.0 ATGGGAGGTGAAATTGATAGAGGATCGCAAATGAAGTATCTCATCGAGGTTGAGAAAGGTCAGGAAGCAAAGGACGGAAAGCCGTCGATCGGCCCTGTGT ACCGCAGTGTCTTAGCCAAGGATGGATTTCCTCCTCCCATTCCTGGATTGAACAGCTGCTGGGACATTTTCCGTTTGAGCGTGGAGAAGTATCCAAACAA TCCGATGCTCGGTCGCCGCGAGATCGTCGACAGCAAGGCGGGTAAATATGTGTGGCAGACGTACAAGGAAGTGTATGACCAAGTTATCGAAGTCGGAAAT GCGATCCGCACCTGCGGTATTCAACAGGGAGAGAAATGTGGTATTTATGGCCCCAATTGTTCGCAGTGGATTATCAGCATGGAGGCTTGCAATGCTCATG GCTTGTACTGTGTCCCTTTGTACGACACTTTAGGTGGGGATGCTGTGAAATATATTCTACATCATTCTGAGGTTTCAATTGCTTTTGCAGAAGAGAAAAA GATTTATGAGGGAGAAAACAAAGAGTATGATTTTCCGGAGAAGCGGAAAAGTGATATATGTACAATTATGTATACTAGTGGAACAACTGGTGATCCAAAG GGGGTCCTGATTTCTAATAACAACATCATTACTGTTGTAGCTGGGGCGAAGCAGGTACTAGAGTCCGTGAATATACAGCTGACTGAAACGGATGTTTATC TTTCATACCTTCCTCTTGCTCATATATTCGATCGAGTGATGGAAGAGTTATTTATTCTTCATGGTGGCGCTATAGGCTTCTGGCGAGGAGACGTGAAATT ATTAGTTGAAGACATTGTAGAACTAAAACCATCCGTTTTCTGTGCTGTTCCTCGTGTGTTAGACCGCATATATGCAGGCTTGACAGAGAAGATCTCTGCC GGGGGAATAGTGAAGAAGACATTGTTCAATTTTGCTTACTCTTACAAACTCAAAAATCTGAACGGTGGGAGTAAGACAGACGAGGCATCTCCGCTCAGCG ACAAAATCGTCTTTAGCAAGGTAAAGCAAGGGTTAGGAGGTAATGTGCGGCTAATTCTATCTGGAGCAGCACCACTGGCCAGCCATGTGGAATCATACCT TCGAGTAGTCACGTGTGCCCACGTCTTACAAGGATACGGTCTGACGGAGAGCTGCGGGGGGAGTTTCATCTCCCTGCCAAATGAAATATCGATGCTTGGC ACCGTAGGCCCTCCGGTGCCTAACGTCGAAATCCGCCTTGAATCAGTTCCTGACATGGGCTACGATGCTCTCTCCAGCACGCCTCGTGGCGAAATCTGCA TCCACGGCGATTCCCTGTTTTCCGGCTACTACAAGCGTGATGATCTCACGGAGGATGTCCTGATTGACGGTTGGTTTCACACGGGGGATGTTGGAGAGTG GCAACCGGATGGAAGTATGAAAATAATTGACAGAAAGAAGAACATCTTCAAGCTGTCACAAGGAGAGTACGTGGCAGTGGAGAATCTGGAGAACATATAT GGTGGTACACCTGGCATTGATTCGATATGGGTATATGGGAACAGCTTGGAGTCGTTCCTAGTCGGGGTGGTGAATCCGAACAGGCAATATCTTGAGAAAT GGGGTCAAGAGAATGGTATTAACGAGCACTTCTTTACTCTCTGCATCAACCCAAAGGCCGTTGAACACATCCTCCAAGAGCTCACCAGTGTTGGAAAGGA GAAAAAGTTGAGAGGCTTCGAGCTATTGAAAGCTGTTTATCTAGAACCTCTAGCTTTCGAAACGGGAAGGGACTTCCTCACTCCAACTTATAAGAAAAAG AGGCCTCAGCTACTACAATATTACCAGGCATCTCTTTCTCCCACTCCTCTCATTCAAGTTCTAATGCATATCTACCTTATTCGCTAA
AA sequence Show only first row Show all	>Lus10001830 pacid=23154506 polypeptide=Lus10001830 locus=Lus10001830.g ID=Lus10001830.BGIv1.0 annot-version=v1.0 MGGEIDRGSQMKYLIEVEKGQEAKDGKPSIGPVYRSVLAKDGFPPPIPGLNSCWDIFRLSVEKYPNNPMLGRREIVDSKAGKYVWQTYKEVYDQVIEVGN AIRTCGIQQGEKCGIYGPNCSQWIISMEACNAHGLYCVPLYDTLGGDAVKYILHHSEVSIAFAEEKKIYEGENKEYDFPEKRKSDICTIMYTSGTTGDPK GVLISNNNIITVVAGAKQVLESVNIQLTETDVYLSYLPLAHIFDRVMEELFILHGGAIGFWRGDVKLLVEDIVELKPSVFCAVPRVLDRIYAGLTEKISA GGIVKKTLFNFAYSYKLKNLNGGSKTDEASPLSDKIVFSKVKQGLGGNVRLILSGAAPLASHVESYLRVVTCAHVLQGYGLTESCGGSFISLPNEISMLG TVGPPVPNVEIRLESVPDMGYDALSSTPRGEICIHGDSLFSGYYKRDDLTEDVLIDGWFHTGDVGEWQPDGSMKIIDRKKNIFKLSQGEYVAVENLENIY GGTPGIDSIWVYGNSLESFLVGVVNPNRQYLEKWGQENGINEHFFTLCINPKAVEHILQELTSVGKEKKLRGFELLKAVYLEPLAFETGRDFLTPTYKKK RPQLLQYYQASLSPTPLIQVLMHIYLIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11030			AMP-dependent synthetase and l...		Lus10001830 [exp]	0	1
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10008710 [exp]	3.6	0.9055
AT1G24160			unknown protein		Lus10003514 [exp]	5.2	0.8925
AT2G21340			MATE efflux family protein (.1...		Lus10017498 [exp]	8.4	0.8863
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10001833 [exp]	8.8	0.8881
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10041423 [exp]	10.1	0.9053
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	13.6	0.9046
AT3G53850			Uncharacterised protein family...		Lus10024355 [exp]	14.1	0.8819
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10029803 [exp]	20.2	0.9018
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10028926 [exp]	20.4	0.8646
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10035723 [exp]	23.0	0.9021

Compare expression of checked genes

Lus10001830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.