Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23840 426 / 7e-142 Leucine-rich repeat (LRR) family protein (.1) AT1G15740 77 / 2e-14 Leucine-rich repeat family protein (.1) AT3G58530 47 / 2e-05 RNI-like superfamily protein (.1) AT4G15475 43 / 0.0006 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003886 [exp] 504 / 5e-176 AT4G23840 281 / 8e-90 Leucine-rich repeat (LRR) family protein (.1) Lus10038107 [exp] 103 / 4e-23 AT1G15740 652 / 0.0 Leucine-rich repeat family protein (.1) Lus10008036 [exp] 100 / 9e-22 AT1G15740 675 / 0.0 Leucine-rich repeat family protein (.1) Lus10007973 [exp] 89 / 4e-21 AT3G05670 51 / 2e-08 RING/U-box protein (.1) Lus10025751 [exp] 88 / 6e-18 AT1G15740 660 / 0.0 Leucine-rich repeat family protein (.1) Lus10035912 [exp] 81 / 2e-15 AT1G15740 637 / 0.0 Leucine-rich repeat family protein (.1) Lus10013501 [exp] 79 / 3e-15 AT3G05670 118 / 1e-27 RING/U-box protein (.1) Lus10014236 [exp] 47 / 6e-05 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10012764 [exp] 44 / 0.0003 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092000 [exp] 570 / 0 AT4G23840 480 / 7e-164 Leucine-rich repeat (LRR) family protein (.1) Potri.006G061700 [exp] 91 / 8e-19 AT1G15740 612 / 0.0 Leucine-rich repeat family protein (.1) Potri.003G028557 [exp] 64 / 3e-10 AT1G07390 388 / 1e-117 receptor like protein 1 (.1.2.3) Potri.005G007900 [exp] 63 / 4e-10 AT1G74170 430 / 5e-132 receptor like protein 13 (.1) Potri.005G009700 [exp] 61 / 2e-09 AT1G74190 453 / 4e-141 receptor like protein 15 (.1) Potri.005G011600 [exp] 60 / 4e-09 AT1G74190 439 / 1e-135 receptor like protein 15 (.1) Potri.003G026914 [exp] 59 / 1e-08 AT1G07390 444 / 1e-137 receptor like protein 1 (.1.2.3) Potri.005G013200 [exp] 54 / 2e-07 AT1G58190 453 / 1e-142 receptor like protein 9 (.1.2) Potri.001G063909 [exp] 51 / 3e-06 AT1G74190 333 / 3e-99 receptor like protein 15 (.1) Potri.003G013700 [exp] 51 / 3e-06 AT2G25470 366 / 2e-110 receptor like protein 21 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001831 pacid=23154499 polypeptide=Lus10001831 locus=Lus10001831.g ID=Lus10001831.BGIv1.0 annot-version=v1.0 ATGGAAACTGAAAGCAGACTGGTGCGGCTGTGCATCGAAGCAGCCTGCCAAAGCAGAGAGAGCATTGAGAGATGGAGGAGGCAGCGACGGACGCTGGAGC GTATGCCTTCTGTTCTCGCCGACGCTCTCCTCCACCGCCTCCTCCAACGCCGCCTCCTCTTCCCTTCCTTACTCGAAGTTTTCAAAAACAGTGTGGAGGA TGTTGATCTCAGAGGTGAGAACACTGTGGATGCTGAGTGGATGGCATATATCGGAGCTTTCCGTTACTTGCACTCCTTGAACCTTGCTGACTGTCACAGA CTTAATAGTTCTGCCCTGTGGCCTCTGATTGGTATGACTAGATTAAAGGAGGTTGACGTTTCTAGATGTGTGAAGGTTACAGATGCTGGCATTCGGCATC TTGTTTCCATTTCAACGTTGGAAGTACTAAGGCTTTCCGGAACTAGCTTAACTGAACAGGGAATTATGCTGCTATCTACTCTTGGAGAGTTGTTAGTTCT AGACTTGGGTGATTTACCTGTCACTGATAGAGCATTGGCTTCTCTCCAGGCACTGGCGAAGCTAGAGTATCTTGACCTCTGGGGAAGTAATATAACTGAT AAAGGTGTTCCTATTCTCAATAACTTCCCGAAGTTGAGCTATCTCAGTCTGGCTTGGACGGGTGTAACATCATTCCCAAATATGCCGTCTATCGGGTGCT TAAACTTAAGCAACTGCACTATTGACTCTGCCCTTGAGAATGATGGTAAGCAAACTCCTCTTACCAAGCTTATTTTGGCTGGAGCGACTATAAAGAACGA GGCTGGTGTTTTCTCGTTGATTGAATCAAGCTCCATTTCATATCTGGATATCTCCAATTCAAGTCTCACCGACTTCAGCTTTTTGTCCGAAATGAGTGCT CTTCAACACTTGGATCTGAGCTCTAGCATGGTAGGCGATGATTCAATCGAGTGGGTATGCTGTATAGGAGCGACCTTGAGAAATCTGAACCTCAGCAAAA CACGTGTCACCTCTGCTGGAATATCAACCTTAGCTCCACATGTTCCCCAACTTGAAGTGTTGTCACTGTCTCACGCTCCAATAGATGACATTTCCATCTC ATCCATTGGCACAATGACATCTCTCAAGGCCCTTGACCTAAGCAACACAAAGATAAAAGGTTTCATTCGCCAAGAAGGAGCTGAGGGAGAGGACATCACC TCCCTGACAAATCTTGTCGGCCTAAAGAGTTTGGAAAACCTGAAACTAGAGCACACACAGGTGGCAGACACAGCTCTAGTTCCCTTGTCAAGCATGAAGG AACTTGGCCATTTGTCGCTCAGGAGCGCTTCGCTGACAGACAATGCCCTTCACCATTTATCCCATCTGTCAAAGCTTACGAATCTCGGGCTTCAGGATGC TGTGTTGACAGACAAAGGACTGGAGTCATTCAAACCCCCTTCAAGTCTTAAAGTGCTTGACTTAAGTGATTGTTGGCTTCTAACTGAGGATGCTATCGTG TCTTTCTGTAGAAGGCATCCTCTTATCGAGGTAAGGCACGGACACTTGCACAACTCTTCAACAGACCAAGCTGGTGGCTCTAGCCGGTCTCCATCCCAAC TGCAAGTATCGTCTTCACCGCCATCCTCATCGAGATGGTCCCAAGCTCACAGGAAACAATCCAAGAGGCCGATATCTTTGCCAGTGTCTCGCTATTTCAT TGGAGTGGAGAAATTTAAGGAAGTGTCGAGGGTCTTGACACATACGATAATGGCCGAATGCGGGTTGGAGCATTCGAAACGAGCCGCCGCTTCAGTCCCT AGCCCTGCTTGTAACCACAATGAACATAAGGTGGAAGTCTATTCTAGGGAGCAAGTGTTGGAGAGAATGCTCTCAAGGGTTTGTAAAGGAAGTTATTGGA TTGGTTTTGTCGAAGAATCGTGA
AA sequence Show only first row Show all	>Lus10001831 pacid=23154499 polypeptide=Lus10001831 locus=Lus10001831.g ID=Lus10001831.BGIv1.0 annot-version=v1.0 METESRLVRLCIEAACQSRESIERWRRQRRTLERMPSVLADALLHRLLQRRLLFPSLLEVFKNSVEDVDLRGENTVDAEWMAYIGAFRYLHSLNLADCHR LNSSALWPLIGMTRLKEVDVSRCVKVTDAGIRHLVSISTLEVLRLSGTSLTEQGIMLLSTLGELLVLDLGDLPVTDRALASLQALAKLEYLDLWGSNITD KGVPILNNFPKLSYLSLAWTGVTSFPNMPSIGCLNLSNCTIDSALENDGKQTPLTKLILAGATIKNEAGVFSLIESSSISYLDISNSSLTDFSFLSEMSA LQHLDLSSSMVGDDSIEWVCCIGATLRNLNLSKTRVTSAGISTLAPHVPQLEVLSLSHAPIDDISISSIGTMTSLKALDLSNTKIKGFIRQEGAEGEDIT SLTNLVGLKSLENLKLEHTQVADTALVPLSSMKELGHLSLRSASLTDNALHHLSHLSKLTNLGLQDAVLTDKGLESFKPPSSLKVLDLSDCWLLTEDAIV SFCRRHPLIEVRHGHLHNSSTDQAGGSSRSPSQLQVSSSPPSSSRWSQAHRKQSKRPISLPVSRYFIGVEKFKEVSRVLTHTIMAECGLEHSKRAAASVP SPACNHNEHKVEVYSREQVLERMLSRVCKGSYWIGFVEES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23840			Leucine-rich repeat (LRR) fami...		Lus10001831 [exp]	0	1
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10009612 [exp]	6.3	0.8131
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10015885 [exp]	6.7	0.7569
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10009542 [exp]	8.0	0.7856
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10009279 [exp]	9.6	0.7768
AT4G11670			Protein of unknown function (D...		Lus10029581 [exp]	17.6	0.7844
AT3G32940			RNA-binding KH domain-containi...		Lus10039188 [exp]	20.1	0.7431
AT5G01160			RING/U-box superfamily protein...		Lus10017185 [exp]	24.0	0.7204
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10032614 [exp]	27.7	0.7665
AT2G42490			Copper amine oxidase family pr...		Lus10026696 [exp]	35.3	0.7461
AT5G62760			P-loop containing nucleoside t...		Lus10004265 [exp]	39.4	0.7277

Compare expression of checked genes

Lus10001831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.