Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26080 70 / 7e-13 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT5G59220 64 / 6e-11 SAG113, HAI1 senescence associated gene 113, highly ABA-induced PP2C gene 1 (.1) AT5G57050 63 / 1e-10 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT3G11410 63 / 2e-10 ATPP2CA, AHG3 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) AT2G29380 62 / 3e-10 HAI3 highly ABA-induced PP2C gene 3 (.1) AT1G07430 62 / 5e-10 HAI2 highly ABA-induced PP2C gene 2 (.1) AT1G72770 52 / 3e-07 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT4G11040 49 / 2e-06 Protein phosphatase 2C family protein (.1.2) AT1G17550 46 / 5e-05 HAB2 homology to ABI2 (.1) AT5G51760 44 / 0.0002 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003887 [exp] 543 / 0 AT2G29380 144 / 1e-39 highly ABA-induced PP2C gene 3 (.1) Lus10033955 [exp] 122 / 3e-31 AT1G07430 154 / 4e-43 highly ABA-induced PP2C gene 2 (.1) Lus10032378 [exp] 123 / 6e-30 AT1G69020 372 / 1e-116 Prolyl oligopeptidase family protein (.1) Lus10019017 [exp] 78 / 2e-15 AT2G29380 280 / 3e-92 highly ABA-induced PP2C gene 3 (.1) Lus10003399 [exp] 65 / 1e-11 AT2G29380 252 / 2e-82 highly ABA-induced PP2C gene 3 (.1) Lus10040270 [exp] 59 / 3e-09 AT2G29380 390 / 1e-134 highly ABA-induced PP2C gene 3 (.1) Lus10040738 [exp] 59 / 3e-09 AT1G07430 429 / 7e-148 highly ABA-induced PP2C gene 2 (.1) Lus10012962 [exp] 58 / 8e-09 AT4G26080 315 / 2e-104 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Lus10016493 [exp] 57 / 1e-08 AT1G07430 421 / 2e-145 highly ABA-induced PP2C gene 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092100 [exp] 87 / 1e-18 AT1G07430 219 / 3e-67 highly ABA-induced PP2C gene 2 (.1) Potri.012G002700 [exp] 85 / 6e-18 AT2G29380 225 / 8e-71 highly ABA-induced PP2C gene 3 (.1) Potri.015G018800 [exp] 82 / 5e-17 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.008G059200 [exp] 66 / 1e-11 AT1G07430 362 / 1e-122 highly ABA-induced PP2C gene 2 (.1) Potri.009G037300 [exp] 64 / 6e-11 AT1G07430 401 / 2e-137 highly ABA-induced PP2C gene 2 (.1) Potri.010G199600 [exp] 63 / 2e-10 AT3G11410 386 / 9e-133 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) Potri.001G245200 [exp] 60 / 2e-09 AT2G29380 410 / 5e-142 highly ABA-induced PP2C gene 3 (.1) Potri.015G133900 [exp] 54 / 8e-08 AT5G51760 338 / 1e-113 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.006G164632 [exp] 52 / 5e-07 AT4G26080 300 / 1e-98 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Potri.012G131800 [exp] 52 / 6e-07 AT5G51760 332 / 3e-111 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10001832 pacid=23154490 polypeptide=Lus10001832 locus=Lus10001832.g ID=Lus10001832.BGIv1.0 annot-version=v1.0 ATGATTTCTTCGCCAATTGATTTGGCGAATAAGAAAAATAATGTTCGAATTCGGCCAGGGCATACTTCCCTCGGACTGATGCCAAATATGAAGAAAATGA GACGGGTCAGCTATTTCCCTGATCCTGAAGCTGAATCTGGCGGTGGGGTAAACGAGAAAACAGCCACCGTCGATTTGGAGCCCAATCTTCCCGTCGAAAC TCTAAACGAACCGACTCCAGGAGAATCGTGGATCGGGGCCAAGACCTGCCACAGTAGGACGTCGGCGAGTCTCTGTCACGGCGTTGCATCTGTGATCGGA AGGCGTAGGGTGATGGAAGACGCTGTTGCGGTGGTTCGAGGACTCGAGGTCGGGGGATTCGAGAATTATGCAGATTTCTTCGGAGTCTACGACGGCAAGG ACAGTGGTGGAGCAGTCTCAGTGATGTGTAGAAATAGGATGCACCTGATGGTGGCGATGGAGGCAGAGAGGAGAATTTCCGGTTCAGGGGAATCCAGCAG GGGATTGGATTACTGGAAGAAGGTCATGATTTACAGTTTCCAGAAGATGGACGAGGAGATCCGTTCAGGTTACACGCCAGAGGACGACGACGTCATAAAG AGAGCCGGCAACGAGAAAGCGAGGGCGGTTGTGGTAATGGTAAGTAAGGAGGAGGTGGTGGTGGCTAATCGGGGAAATTCGAAAGCGGTTTTATACCGTG GAGGTGTAGCAATGCCTTTATGCAGTGAAGTCATCGACAAAGTAAAGCCTTTGACCATCCAGCTTGAAACACATTCTTCTTCTAGGTACATCAAATCTGG AAAGAGACATCTAGGGAGCATTCGGCACCTCAAATTCGTTCCGATCATGAAACGAATTAGGCGCCGTCCGATTACAATTATAAAACGTATTCGACAAGCC TCCACTCCGATTTTAGGCAAACCGGATAGGGGAGGCGGTGAACGGGAAACTCTCGGCGACAAGAGCATAAATTGGAAAGTAAGCCCCGTCTTCGGAAGAG TACTACGTCCTGTTACTGTTACAGGTAATACATTGATGCATTATAAGTCGGAGGGTGGTGCCGGAGGAACAGTGACGGAGCGGAGTGAATGGGACGATTT TCTGGTGATAGCATCAGACGGGTTGTGGGATGTGATATCGAACGAGATAGCGTGTGCAGTGGTGGGGAAATGTCTGAACGGCAGAATAAGGATGAAGTTT GCAGACGAGACGAGTGAGAACTGTGCAGCGGCCGCAGCATCGTTTCTCGCTGAATTCGCAATGGCTAAAGGGAGCCTGGACAATATCAGCGTCATTGTTG TCAAGTTGGGGTGA
AA sequence Show only first row Show all	>Lus10001832 pacid=23154490 polypeptide=Lus10001832 locus=Lus10001832.g ID=Lus10001832.BGIv1.0 annot-version=v1.0 MISSPIDLANKKNNVRIRPGHTSLGLMPNMKKMRRVSYFPDPEAESGGGVNEKTATVDLEPNLPVETLNEPTPGESWIGAKTCHSRTSASLCHGVASVIG RRRVMEDAVAVVRGLEVGGFENYADFFGVYDGKDSGGAVSVMCRNRMHLMVAMEAERRISGSGESSRGLDYWKKVMIYSFQKMDEEIRSGYTPEDDDVIK RAGNEKARAVVVMVSKEEVVVANRGNSKAVLYRGGVAMPLCSEVIDKVKPLTIQLETHSSSRYIKSGKRHLGSIRHLKFVPIMKRIRRRPITIIKRIRQA STPILGKPDRGGGERETLGDKSINWKVSPVFGRVLRPVTVTGNTLMHYKSEGGAGGTVTERSEWDDFLVIASDGLWDVISNEIACAVVGKCLNGRIRMKF ADETSENCAAAAASFLAEFAMAKGSLDNISVIVVKLG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10001832 [exp]	0	1
					Lus10026444 [exp]	2.4	0.7905
AT1G53520			Chalcone-flavanone isomerase f...		Lus10026174 [exp]	10.5	0.7949
AT1G51940			protein kinase family protein ...		Lus10004625 [exp]	14.3	0.7103
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005244 [exp]	15.5	0.7745
AT5G60210		RIP5	ROP interactive partner 5 (.1....		Lus10011643 [exp]	15.6	0.7488
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10037858 [exp]	20.6	0.7760
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10037128 [exp]	26.6	0.7669
AT5G01090			Concanavalin A-like lectin fam...		Lus10027751 [exp]	32.2	0.6893
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10041769 [exp]	32.2	0.7324
AT5G19290			alpha/beta-Hydrolases superfam...		Lus10036530 [exp]	38.9	0.6954

Compare expression of checked genes

Lus10001832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.