Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64390 960 / 0 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G11050 928 / 0 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT2G32990 618 / 0 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT1G48930 590 / 0 ATGH9C1 glycosyl hydrolase 9C1 (.1) AT2G44550 504 / 1e-174 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT2G44540 503 / 8e-174 ATGH9B9 glycosyl hydrolase 9B9 (.1) AT2G44570 491 / 5e-169 ATGH9B12 glycosyl hydrolase 9B12 (.1) AT2G44560 486 / 4e-167 ATGH9B11 glycosyl hydrolase 9B11 (.1) AT1G70710 482 / 8e-166 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G23210 476 / 2e-163 ATGH9B6 glycosyl hydrolase 9B6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003888 [exp] 1180 / 0 AT1G64390 960 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10032377 [exp] 1078 / 0 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10033957 [exp] 851 / 0 AT1G64390 797 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10010201 [exp] 626 / 0 AT1G48930 812 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10035316 [exp] 595 / 0 AT2G32990 751 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10017402 [exp] 589 / 0 AT1G48930 746 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10009724 [exp] 574 / 0 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10008208 [exp] 496 / 7e-171 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10029071 [exp] 475 / 8e-163 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G092200 [exp] 1019 / 0 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.003G139600 [exp] 1012 / 0 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.014G157600 [exp] 624 / 0 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.007G071200 [exp] 615 / 0 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.001G356000 [exp] 602 / 0 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.010G109200 [exp] 485 / 8e-167 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.008G132700 [exp] 483 / 8e-166 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.014G126900 [exp] 474 / 2e-162 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.002G202400 [exp] 474 / 3e-162 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G083200 [exp] 462 / 7e-158 AT1G02800 593 / 0.0 cellulase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0203 [flax] [poplar] CBD PF09478 [flax] [poplar] CBM49 Carbohydrate binding domain CBM49 CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10001833 pacid=23154502 polypeptide=Lus10001833 locus=Lus10001833.g ID=Lus10001833.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCATCCCTGTTTCTTCTCTTCATACTTAGCTCATTTCAGCATGCTTTTGCCGGCCATGACTACGGCCAAGCGCTCAGCAAGAGCATTCTCT TCTTTGAAGCTCAACGGTCTGGATTCCTTCCCCATAACCAACGGGTCACTTGGAGATCCAATTCAGGCCTCGCCGACGGCAAAGCTAGTGGGGTGGATCT GACCGGAGGATACTATGACGCCGGCGACAATGTGAAGTTCGGACTCCCAATGGCTTTCACCGTCACGATGATGTCTTGGAGCATTATCGAGTACGGTAAG CAAATGGCTGCCAGCGGTGAGCTCCGCAACGCCATGGAAGCTATCAAATGGGGGACTGATTATTTCATCAAAGCCCATCCAGAGCCTGATGTTCTCTACG GCGAGGTAGGCGATGGAACCACTGATCACTACTGTTGGCAAAGACCCGAGGATATGACAACTGACCGCCGTGCTTACAGGATCGACCCAAGCAATCCGGG CTCTGATCTCGCCGGAGAGACGGCAGCCGCCATGGCAGCTGCCTCCATCGTATTCCGCCACTCTGACCCGGCATACTCTCACGAGCTTCTCAATCACGCT TATCAGCTGTTTGATTTTGCAAACAAACACCGAGGCAAGTACGACAGCAGCATCACCGTCGCCCAGAAATACTACCACTCAATCAGTGGCTACAATGATG AGTTGCTATGGGCTGCAGCGTGGCTATACCAAGCATCCAGCAATGAATACTACTTGAACTACCTAGCAGCCAATGGTGATGCATTGGGTGGAACCGGCTG GGCCATGACCGAATTCGGTTGGGATGTCAAATACGCTGGTGTACAGACACTAGTATCCAAGATTTTGATGCAAGGCAGGGCTGGCCGCCATGCCCCGGTC TTCGAGAAGTATCAGCAGAAGGCAGAATACTTCATGTGTTCATGCCTTGGGAAAGGTAGGAGTATTAAGAAAACTCCAGGTGGTTTGATTTTCAGGCAGA GGTGGAACAATATGCAGTTTGTCACCAGTGCATCATTCCTCGCCACTGTTTACTCTGATTACCTCTCTTCCGCCCGCAAGAACCTCCACTGTTCTTCTGC TGCCGTCTCTCCTTCCGACCTCCTCGCATTCGCCAAGTCTCAGGTTGATTACATTCTTGGGGACAATCCTAGAGCAACAAGCTACATGGTGGGATATGGG AACAACTATCCACAGCAAGTCCACCACAGGGCATCCTCCATTGTTTCCTACAAGAAGGATCCCAGCCCGATCAGCTGCCGTGGAGGCTACGCTACTTGGT TCAGCAGGAAAGAAAGCGACCCTAATCTCCTCACTGGTGCAATCGTTGGTGGACCGGACGCTTATGACAATTTCGCTGACCAAAGAGACAACTATGAGCA GACTGAGCCTGCTACCTACAACAATGCTCCCCTTCTCGGTATCCTGGCTCGTCTCAGTGCCGGCCATAGTGGTTACAGCCAGCTCCTTCCAGAAGCTGTG CTTCCAGCTCCTGCCCAGAAAGTTGAAACCCCAAAAGCAACAGTTATCCCTGCTCCAGCCTCAACTTCTGGACCTTTTTCCATCAAGCAAAAGATGACAG CTTCATGGAGCCATCAAGGCGAAACTTACTACAGATACTCTACAATTGTGACTAACAACTCACCAAAGGCAGTGAGCAATCTCAAGCTTTACATTAACAA GCTATACGGTCCCGTCTGGGGTGTGACAAAATCCAGAGACTCTTATGGTTTCCCAGCATGGATCAAGTTTTTGGCAGCTGGGAAAAGCATCGAGTTTGTC TACATTCATACTGCTCCGGCTGCAGATGTCTCTGTTTCAAGCTATAGTTTGACGTAA
AA sequence Show only first row Show all	>Lus10001833 pacid=23154502 polypeptide=Lus10001833 locus=Lus10001833.g ID=Lus10001833.BGIv1.0 annot-version=v1.0 MAAASLFLLFILSSFQHAFAGHDYGQALSKSILFFEAQRSGFLPHNQRVTWRSNSGLADGKASGVDLTGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGK QMAASGELRNAMEAIKWGTDYFIKAHPEPDVLYGEVGDGTTDHYCWQRPEDMTTDRRAYRIDPSNPGSDLAGETAAAMAAASIVFRHSDPAYSHELLNHA YQLFDFANKHRGKYDSSITVAQKYYHSISGYNDELLWAAAWLYQASSNEYYLNYLAANGDALGGTGWAMTEFGWDVKYAGVQTLVSKILMQGRAGRHAPV FEKYQQKAEYFMCSCLGKGRSIKKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLSSARKNLHCSSAAVSPSDLLAFAKSQVDYILGDNPRATSYMVGYG NNYPQQVHHRASSIVSYKKDPSPISCRGGYATWFSRKESDPNLLTGAIVGGPDAYDNFADQRDNYEQTEPATYNNAPLLGILARLSAGHSGYSQLLPEAV LPAPAQKVETPKATVIPAPASTSGPFSIKQKMTASWSHQGETYYRYSTIVTNNSPKAVSNLKLYINKLYGPVWGVTKSRDSYGFPAWIKFLAAGKSIEFV YIHTAPAADVSVSSYSLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10001833 [exp]	0	1
AT3G28040			Leucine-rich receptor-like pro...		Lus10037276 [exp]	4.9	0.8936
AT1G10850			Leucine-rich repeat protein ki...		Lus10029075 [exp]	7.4	0.8881
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10015210 [exp]	7.5	0.8899
AT4G11030			AMP-dependent synthetase and l...		Lus10001830 [exp]	8.8	0.8881
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001178 [exp]	9.1	0.8967
AT4G23820			Pectin lyase-like superfamily ...		Lus10003890 [exp]	9.6	0.8960
AT1G49750			Leucine-rich repeat (LRR) fami...		Lus10019830 [exp]	11.8	0.8803
AT1G32860			Glycosyl hydrolase superfamily...		Lus10008277 [exp]	14.7	0.8725
AT5G47900			Protein of unknown function (D...		Lus10039223 [exp]	15.6	0.8659
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030899 [exp]	16.6	0.8797

Compare expression of checked genes

Lus10001833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.