Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54320 470 / 2e-167 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) AT3G12740 465 / 2e-165 ALIS1 ALA-interacting subunit 1 (.1) AT1G79450 453 / 8e-161 ALIS5 ALA-interacting subunit 5 (.1.2) AT1G16360 439 / 2e-155 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) AT5G46150 337 / 4e-115 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001762 [exp] 605 / 0 AT1G54320 527 / 0.0 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1) Lus10033283 [exp] 400 / 7e-140 AT1G79450 447 / 3e-158 ALA-interacting subunit 5 (.1.2) Lus10034744 [exp] 392 / 4e-136 AT3G12740 427 / 3e-150 ALA-interacting subunit 1 (.1) Lus10038516 [exp] 387 / 7e-135 AT5G46150 491 / 9e-176 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2) Lus10023290 [exp] 377 / 1e-130 AT5G46150 482 / 3e-172 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082100 [exp] 470 / 2e-167 AT3G12740 479 / 6e-171 ALA-interacting subunit 1 (.1) Potri.010G173900 [exp] 457 / 2e-162 AT3G12740 512 / 0.0 ALA-interacting subunit 1 (.1) Potri.017G139300 [exp] 453 / 1e-160 AT3G12740 437 / 5e-154 ALA-interacting subunit 1 (.1) Potri.004G081100 [exp] 439 / 2e-155 AT1G79450 429 / 4e-151 ALA-interacting subunit 5 (.1.2) Potri.001G381500 [exp] 360 / 1e-123 AT1G79450 398 / 2e-138 ALA-interacting subunit 5 (.1.2) Potri.011G082100 [exp] 352 / 2e-121 AT5G46150 456 / 4e-162 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1), LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.2) Potri.001G337466 [exp] 68 / 1e-14 AT1G16360 50 / 7e-09 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03381 [flax] [poplar] CDC50 LEM3 (ligand-effect modulator 3) family / CDC50 family
Representative CDS sequence Show only first row Show all	>Lus10001834 pacid=23142380 polypeptide=Lus10001834 locus=Lus10001834.g ID=Lus10001834.BGIv1.0 annot-version=v1.0 ATGAGCATCAATAACGCTGCCCCTTCCTCCAGTTCAGCCGCAACCAATGGATCTGTCGATGCTGCTGCTCCCAGGCGCAATTCTAAACGACCTAAATATT CTAAGTTTACACAACAGGAACTTCCTGCTTGTAAACCAATTCTGACACCAGGATGGGTGATCTCCGCTTTCCTGCTGGTCAGCGTTGTCTTTGTTCCCAT CGGAGTTGCTTCCTTGTACGCTTCAAGAGATGTTGTCGAGATTGTTAACCGCTATGAAACCGCTTGCATTCCTCCCCAAAACAGAACTAACAAGGTTGCG TATATCCAGAGTGCTGCTGCGAATAAAACATGTGTCAGAACAATAAGAAGCAGTCTCTTTTTCCTATACCCTTTTTGGTATGTGAAAAGCAGAAGTGATG GCCAATTGAGAAGTAACAGTGGACAAGACGAGACGACTACATGTAAACCCGAGGATAGAGTCAATGGGAGCGCCTCTATTGTCCCATGTGGGCTAATAGC TTGGAGTCTGTTTAATGATACCTATAGCTTCTCTCGTGGCAATGCGCAATTGGATGTGAATAAAAAAGATATCTCCTGGAAGAGTGACAGAGATCACAAG TTTGGTAAAGATGTTTTCCCAAAGAACTTCCAGAAAGGGAGTCTTATCGGTGGTGGGGATCTCAATGAATCTATACCGCTGAGCGAGCAAGAGGATCTTA TTGTTTGGATGAGAACTGCAGCTCTACCAACTTTCAGAAAGTTGTATGGGAAGATAGAAACGGACCTCAATGCAAATGACGAGATACGTGTAACATTGCG CAACAACTACAACACCTATAGTTTCAATGGAAAGAAGAAACTTGTACTGTCAACAACGAGCTGGCTTGGTGGGAAGAACGACTTCCTCGGAATTGCCTAC CTCACAGTTGGGGGTTTATGCTTGTTCTTGGCAGTATGCTTCCTCATCGTGTATCTTGTGAAGCCCAGGCGCCTTGGAGACCCCTCTTATTTGTCGTGGA ATAGAGGTCCCGGAGGACGTTAA
AA sequence Show only first row Show all	>Lus10001834 pacid=23142380 polypeptide=Lus10001834 locus=Lus10001834.g ID=Lus10001834.BGIv1.0 annot-version=v1.0 MSINNAAPSSSSAATNGSVDAAAPRRNSKRPKYSKFTQQELPACKPILTPGWVISAFLLVSVVFVPIGVASLYASRDVVEIVNRYETACIPPQNRTNKVA YIQSAAANKTCVRTIRSSLFFLYPFWYVKSRSDGQLRSNSGQDETTTCKPEDRVNGSASIVPCGLIAWSLFNDTYSFSRGNAQLDVNKKDISWKSDRDHK FGKDVFPKNFQKGSLIGGGDLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIETDLNANDEIRVTLRNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAY LTVGGLCLFLAVCFLIVYLVKPRRLGDPSYLSWNRGPGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54320			LEM3 (ligand-effect modulator ...		Lus10001834 [exp]	0	1
AT5G04750			F1F0-ATPase inhibitor protein,...		Lus10034146 [exp]	1.4	0.9020
AT2G20410			RNA-binding ASCH domain protei...		Lus10006580 [exp]	1.7	0.8955
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10040912 [exp]	3.9	0.8905
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10017318 [exp]	9.2	0.8913
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Lus10010005 [exp]	9.7	0.9021
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10042727 [exp]	12.5	0.8904
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10037601 [exp]	17.6	0.8815
AT1G15080		ATLPP2, LPP2, A...	PHOSPHATIDIC ACID PHOSPHATASE ...		Lus10034629 [exp]	18.5	0.8101
AT1G25400			unknown protein		Lus10034335 [exp]	19.0	0.8276
AT2G16790			P-loop containing nucleoside t...		Lus10037373 [exp]	19.3	0.8382

Compare expression of checked genes

Lus10001834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.