Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79340 476 / 1e-167 AtMCP2d, ATMC4 metacaspase 2d, metacaspase 4 (.1) AT1G79330 460 / 2e-161 ATMC5, AMC6, ATMCP2B metacaspase 2b, metacaspase 5 (.1) AT1G79320 402 / 5e-139 AtMCP2c, ATMC6 metacaspase 2c, metacaspase 6 (.1) AT1G79310 400 / 6e-138 AtMCP2a, ATMC7 metacaspase 2a, metacaspase 7 (.1) AT5G04200 214 / 2e-66 AtMCP2f, ATMC9 metacaspase 2f, metacaspase 9 (.1) AT1G16420 214 / 1e-65 AtMCP2e, ATMC8 metacaspase 2e, ARABIDOPSIS THALIANA METACASPASE 8, metacaspase 8 (.1) AT1G02170 93 / 9e-21 AtMCP1b, ATMC1, LOL3, ATMCPB1, MCP1B, AMC1 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) AT4G25110 83 / 4e-17 AtMCP1c, ATMC2 metacaspase 1c, metacaspase 2 (.1.2) AT5G64240 77 / 2e-15 AtMCP1a, ATMC3 metacaspase 1a, metacaspase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001761 [exp] 712 / 0 AT1G79340 560 / 0.0 metacaspase 2d, metacaspase 4 (.1) Lus10012106 [exp] 167 / 5e-48 AT5G04200 392 / 2e-137 metacaspase 2f, metacaspase 9 (.1) Lus10010437 [exp] 135 / 2e-38 AT5G04200 204 / 2e-66 metacaspase 2f, metacaspase 9 (.1) Lus10042857 [exp] 92 / 4e-20 AT1G02170 501 / 3e-179 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10028157 [exp] 91 / 1e-19 AT1G02170 540 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10035630 [exp] 91 / 1e-19 AT5G64240 214 / 1e-66 metacaspase 1a, metacaspase 3 (.1.2) Lus10009321 [exp] 79 / 8e-16 AT1G02170 327 / 8e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10015843 [exp] 74 / 3e-14 AT1G02170 329 / 2e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10035628 [exp] 71 / 4e-13 AT1G02170 270 / 4e-88 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G175000 [exp] 539 / 0 AT1G79340 496 / 2e-175 metacaspase 2d, metacaspase 4 (.1) Potri.008G081100 [exp] 533 / 0 AT1G79330 510 / 0.0 metacaspase 2b, metacaspase 5 (.1) Potri.006G026500 [exp] 174 / 9e-51 AT5G04200 426 / 4e-151 metacaspase 2f, metacaspase 9 (.1) Potri.016G024500 [exp] 172 / 2e-50 AT5G04200 425 / 1e-150 metacaspase 2f, metacaspase 9 (.1) Potri.014G052500 [exp] 87 / 2e-18 AT1G02170 513 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112200 [exp] 84 / 1e-17 AT1G02170 446 / 4e-157 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112700 [exp] 81 / 1e-16 AT1G02170 460 / 9e-163 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G113100 [exp] 81 / 2e-16 AT1G02170 471 / 3e-167 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053100 [exp] 80 / 5e-16 AT1G02170 378 / 1e-129 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053000 [exp] 76 / 9e-15 AT1G02170 208 / 4e-64 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [flax] [poplar] Peptidase_CD PF00656 [flax] [poplar] Peptidase_C14 Caspase domain
Representative CDS sequence Show only first row Show all	>Lus10001835 pacid=23142387 polypeptide=Lus10001835 locus=Lus10001835.g ID=Lus10001835.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAGGCAGTTCTGATCGGATGCAATTACCCTGGAACCAAGGCTGAGCTCAAGGGTTGCGTCAACGATGTCAACAGGATGCACCGCTGTCTCG TCGATCGCTACGGTTTCTCCCCCGACGACATCACCGTCTTGATCGACACCGACAGCTCCTACACCCAGCCCACTGGCAAAAACATCCGATCCGCCATCAC CGATCTTGTCAGCTCCGGCACCTCCGGCGACTTCCTCTTCCTCCATTACAGCGGCCACGGCACCAGGCTACCCGCCGAGACTGGCGAGGAAGACGATACT GGTTATGACGAGTGTATCGTCCCCTGCGACATGAATCTCATCACCGATGACGATTTCAGGGAATTTGTAGATCGGGTGCCTAGAGGGTGCCGCATAACAG TTGTATCTGATTCCTGCCACAGCGGAGGCCTTATTGACGAGGCCAAGGAGCAAATTGGAGATAGTACTCGTCAAGAGGAGGAGAAATCAGAATCTTCTGG TTTTGGATTCAAAAACTTCCTGCACAAGAGTGTAGAAGGTGCCTTAGAATCCCGTGGAATCCACGTTCCTTCGGGGCTGCGTCACCATGGTCAGGGTGGT GGGGAGGAGGAAGAAGAGGTTTCTGTTAAAGAGATTGAAACCGAGTCTGGTGAGCGGGCCTACGTCAAAAACAAATCCCTGCCCCTGTCCACGTTCATAG AAATGCTGAAGCAGAAGACGGGCAAAGACGACGTTGATGTAGGGAATCTGAGACCAACCCTTTTCGACGCCTTTGGTGAAGATGCAAGCCCCAAGGTCAA GAAATTCATGAAGGTGATTCTGGACAAACTGCAACATGGCGATGGGGGGACTGGAGGTGGCGGATTCCTGGGGTTGGTGGGTGGTCTAGCTCAAGAGTTC CTCAAACAAAAACTTGAACGGGATGAGGAGTATGCAAAGCCTGCACTTAAGACCGAGGTTGCGAGCAAGCAAGAAGTCTATGCTGGGGCAGCACGGAAGT CCCTGCCAGGAGGTGCAATCCTCATCAGTGGGTGCCAGAGTAACCAAACTTCTGCTGATGCGACACCTGCGGGAAAGGTCGACCAAGCTTATGGAGCCCT TAGCAATGCAATACAGACTGTGATAGCTGAAGCAGACACTGACCAAGTTAGTAACGAAGAAGTGGTTAACAAAGCAAGGAACTTGCTGAAGAAACAGGGT TTCACCCAGCAACCAGGTCTGTACTGCAGTGACGACCTAACTCGTGCTGCCTTCATCTGCAACTGA
AA sequence Show only first row Show all	>Lus10001835 pacid=23142387 polypeptide=Lus10001835 locus=Lus10001835.g ID=Lus10001835.BGIv1.0 annot-version=v1.0 MGKKAVLIGCNYPGTKAELKGCVNDVNRMHRCLVDRYGFSPDDITVLIDTDSSYTQPTGKNIRSAITDLVSSGTSGDFLFLHYSGHGTRLPAETGEEDDT GYDECIVPCDMNLITDDDFREFVDRVPRGCRITVVSDSCHSGGLIDEAKEQIGDSTRQEEEKSESSGFGFKNFLHKSVEGALESRGIHVPSGLRHHGQGG GEEEEEVSVKEIETESGERAYVKNKSLPLSTFIEMLKQKTGKDDVDVGNLRPTLFDAFGEDASPKVKKFMKVILDKLQHGDGGTGGGGFLGLVGGLAQEF LKQKLERDEEYAKPALKTEVASKQEVYAGAARKSLPGGAILISGCQSNQTSADATPAGKVDQAYGALSNAIQTVIAEADTDQVSNEEVVNKARNLLKKQG FTQQPGLYCSDDLTRAAFICN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Lus10001835 [exp]	0	1
AT5G01750			Protein of unknown function (D...		Lus10001255 [exp]	2.4	0.8481
					Lus10017454 [exp]	3.2	0.8324
AT3G19240			Vacuolar import/degradation, V...		Lus10014053 [exp]	3.5	0.8101
AT1G11360			Adenine nucleotide alpha hydro...		Lus10031594 [exp]	5.7	0.8278
AT2G20230			Tetraspanin family protein (.1...		Lus10011910 [exp]	7.4	0.7978
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10017065 [exp]	10.4	0.8268
AT2G37035			unknown protein		Lus10026520 [exp]	10.6	0.7889
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10016948 [exp]	11.8	0.7843
AT4G29350		PRF2, PFN2, PRO...	profilin 2 (.1)		Lus10012936 [exp]	16.3	0.7874
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Lus10024482 [exp]	17.0	0.7725

Compare expression of checked genes

Lus10001835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.