Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79350 1766 / 0 EMB1135 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G01460 46 / 0.0002 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT2G25170 45 / 0.0006 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001760 [exp] 1742 / 0 AT1G79350 1480 / 0.0 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10041019 [exp] 47 / 0.0001 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10005339 [exp] 47 / 0.0002 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10042764 [exp] 45 / 0.0004 AT1G77250 301 / 1e-95 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10031846 [exp] 44 / 0.0007 AT4G14700 943 / 0.0 origin recognition complex 1 (.1) Lus10031848 [exp] 44 / 0.0007 AT4G14700 942 / 0.0 origin recognition complex 1 (.1) Lus10008796 [exp] 44 / 0.0007 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G174900 [exp] 1851 / 0 AT1G79350 1959 / 0.0 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G081200 [exp] 1846 / 0 AT1G79350 1971 / 0.0 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.017G072460 [exp] 45 / 0.0005 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10001836 pacid=23142390 polypeptide=Lus10001836 locus=Lus10001836.g ID=Lus10001836.BGIv1.0 annot-version=v1.0 ATGATCGTGTCAAACCTTTTTTTCTCCCTGTCCTTGTTTCATTTACTTCAATTAGCAATTGATGTAGAGCAGGAAGAAGACGAGGGTGGATTGGTGGGAG AAACATTTACAGATTATAGGCCTCCGAAAGTAAGCATTGGGCTACCACATCCTGATCCTATTGTTGAAACATCTTCCTTGTCCGCCATACAGCCACCGGA GCCAACTTATGATCTAAAAATTAAAGATGAGTTGGAACATACGCGGGCATTGTCATGCTTGCAGATTGAGACATTGGTTTATGCTTGCCAGAGACACCAG CAGCATCTTCAATGTGGTAACAGGGCTGGATTTTTCGTTGGAGATGGGGCCGGTGTGGGTAAAGGTCGAACAATTGCCGGATTGATATTGGAGAACTGGC ACTGTGGACGGAAGAAAGCAATTTGGATTTCAATTGGTTCCGATTTAAAGTTTGATGCAAGAAGGGACTTGGATGACATGGGTGCGTCATTTATTGAAGT GCATGCTCTAAACAAACTACCGTACTCCAAACTTGATTCAAAGAGTGTTGGGGTGAAGGATGGTGTTGTGTTTCTGACATACAATAGTCTCATTGCATCA TCTGAGAAAGGTCGTTCTCGACTGCAGCAGCTTGTACAGTGGTTTGGATCTGAATTTGATGGTCTTCTGGTATTTGATGAGTGCCACAAAGCCAAAAATT TGGTACCTGAAGCTGGGAGCCAGCCAACACGAACTGGTGAAGCAGTTTTGGACATTCAGTCCAGAATACCAGAGGCTCGTGTCGTCTATTGCTCAGCCAC TGGGGCATCTGAGCCCCGGAACTTGGGTTACATGGTCAGGCTTGGACTCTGGGGACCTGGAACATCTTTCCCTGACTTCCAAAAGTTCCTAGGTGCAATG GAAAAAGGAGGCGTTGGCGCATTGGAACTTGTTGCAATGGACATGAAAGCAAGGGGAATGTATGTCTGTCGTACTCTTAGCTACAAAGGTGCAGAGTTTG AAGTTGTTGAAGCACCTCTGGAACCTGACATGATGGAAATGTACAAAAAAGCAGCTGAATTTTGGGCAGAGCTACGAGTGGAGTTGCTTTCAGCAAGTGC TTTCCTTGTGGATGAAAAACCTAATTCTAGTCAGTTGTGGAGATTGTATTGGTCAAGCCACCAGCGGTTTTTTAGACACCTGTGCATGTCAGCTAAGGTG CCTGCTACTTTAAAACTAGCTAAGCGTGCTCTGATGGAAGATAAATGTGTAGTCATTGGCCTGCAAAGTACGGGGGAGGCACGGACAGAGGAAGCTGTCA CTAAATATGGTGTCGAGCTTGATGATTTTATTTCTGGACCACGAGAGTTGTTGCTAAAATTTGTTGAAGACAATTATCCCTTGCCTGATAAACCTGAACC GCTCGATGGAGAGAGTGACACAGTAGAACTCCAACGGAAGAGACATTCAACAGGATCTGATGTTTCCTTGAAAGGAAGAGTTAGAAAAGTTGCGAGGCTG AAACCTTCAAAGAATCATGAAAGTGATGAAGAATCAGAAACTGACTCTGCAGGTGATTCCACTGAATCTGATGATGATGACGAGTTTCAGATTTGTGAGA TGTGCAATGGAGAATCGGAGAGTAAAAGACTTATCAGATGTTCTTGTTGTGGGCAACTTCTGCACCATTCATGTATAGTCCCGCCTATTGCAGATATTCC ATCTGAAGATTGGTCATGCCAGTCATGCAAGGAAAAAACAGAAGAGTTTCTCAAAGCAAGACGTGTGTACTTAGCTGAACTTATGAAGAGGTACGAAGTT GCTCTTGACCGCAAGTCAAAAATTTTGGAGATAATTCGCCTCTTGGATCTTCCCAACAACCCATTGGACGACATAATTGACCAGCTTGGAGGCCCAGATA GAGTTGCTGAGATCACTGGAAGGAAGGGCATGCTCGTGAGAGCATCTACGGGGAAAGGTGTGACTTATCAGCAAAGGAACACAAAGGATGTTTCTATGGA AATGGTCAACATGCATGAAAAACAACAATTTATGGATGGCAAGAAATTGGTTGCTATCATTTCCGAAGCTGGATCTGCTGGTGTTTCTCTGCAGGCAGAT AGACGAGCCATAAATCAGAAAAGGAGGGTTCATTTGACTCTAGAACTTCCTTGGAGTGCTGACCGGGCAATACAGCAATTTGGAAGGACTCATCGTTCAA ATCAAGCCTCTGCCCCTGAATATAGGTTGTTGTTCACTGATCTTGGTGGAGAACGGCGGTTTGCTTCTATTGTTGCTAAGAGATTGGAATCACTAGGAGC CTTGACGCAAGGGGACCGCAGAGCTGGACCGTCTTTGAGTGCCTACAATTATGATAGTCTTTATGGGAAAAAGGCTTTGGTGGTCATGTATAAAGGAATA ATGGAACAGGACACTTTACCTGTCGTCCCTCCTGGATGTTCAGCTGAGAAGCCAGAGACAACTCAAGAATTTATATTGAAAGCAAAAGCTGCCCTCATCT CTGTTGGAATAGTTCGGGACACTGTTCTTGGTAACGGTAAAGACTCTGGAAAATTATCTGGGCGCATAATTGATTCAGATATGCATGATGTTGGTCGTTT TCTTAATCGACTCCTTGGTCTGCCTCCTGAGATTCAGAACAGGCTGTTCGAGTTATTTGTCAAAGTCTTAGATCTTTTGATCCACAATGCTCGTATTGAG GGAAATCTTGATTCAGGAATCATTGATATGAGAGCGAGCGTCATTGAACTAAAAGGGACTCCAAAGACCGTTCATGTGGATCAAATGTCTGGCGCCTCCA CAGTACTCTTTACTTTTTCCATGAACCGGGGAGTCACATGGGAGGCTGCAAATGCCATGCTTGACGGGAAGCAAAAGGATGGCATCGTTTGCTCCAATGA TGGATTCTATGAATCTAAGAGAGAGTGGTTAGGAAAACGTCACTTCATTTTAGCTTTCGAAAGCACCGCCTCTGGACTGTATAAGATAGTTAGACCAGCG GTTGGGGAGTCAGTAAGGGAGATGTCTCTGTCGGAGTTGAGAAACAAGTACAGAAAGCTGTCTTCTTTGGACAAAGCATGCAAGGATTGGGAAGGTGAAT ATGAAGTGTCGTCCGCACAGTGCATGCATGGCCCTAACTGTAAGATTGGCAGCTTTTGTACCGTCGGAAGAAGGGTGCAGGAAGTGTACGTTCTGGGTGG CATTGTTCTTCCGGTCTGGGGTACCATAGAGAAGGCCCTTTCGAAACAGGGACGTCAAAGCCATAAGCGGCTGCGTATTGTGCGTTTAGAAACCACAAGC GATAATAATAGGATTGTTGGGGTTCTAGTTCCAAATGGAGCTGTCGAAGCTGTACTTGAAGATCTAGCATGGGTGGAAGAGGTTGATGATTAA
AA sequence Show only first row Show all	>Lus10001836 pacid=23142390 polypeptide=Lus10001836 locus=Lus10001836.g ID=Lus10001836.BGIv1.0 annot-version=v1.0 MIVSNLFFSLSLFHLLQLAIDVEQEEDEGGLVGETFTDYRPPKVSIGLPHPDPIVETSSLSAIQPPEPTYDLKIKDELEHTRALSCLQIETLVYACQRHQ QHLQCGNRAGFFVGDGAGVGKGRTIAGLILENWHCGRKKAIWISIGSDLKFDARRDLDDMGASFIEVHALNKLPYSKLDSKSVGVKDGVVFLTYNSLIAS SEKGRSRLQQLVQWFGSEFDGLLVFDECHKAKNLVPEAGSQPTRTGEAVLDIQSRIPEARVVYCSATGASEPRNLGYMVRLGLWGPGTSFPDFQKFLGAM EKGGVGALELVAMDMKARGMYVCRTLSYKGAEFEVVEAPLEPDMMEMYKKAAEFWAELRVELLSASAFLVDEKPNSSQLWRLYWSSHQRFFRHLCMSAKV PATLKLAKRALMEDKCVVIGLQSTGEARTEEAVTKYGVELDDFISGPRELLLKFVEDNYPLPDKPEPLDGESDTVELQRKRHSTGSDVSLKGRVRKVARL KPSKNHESDEESETDSAGDSTESDDDDEFQICEMCNGESESKRLIRCSCCGQLLHHSCIVPPIADIPSEDWSCQSCKEKTEEFLKARRVYLAELMKRYEV ALDRKSKILEIIRLLDLPNNPLDDIIDQLGGPDRVAEITGRKGMLVRASTGKGVTYQQRNTKDVSMEMVNMHEKQQFMDGKKLVAIISEAGSAGVSLQAD RRAINQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTDLGGERRFASIVAKRLESLGALTQGDRRAGPSLSAYNYDSLYGKKALVVMYKGI MEQDTLPVVPPGCSAEKPETTQEFILKAKAALISVGIVRDTVLGNGKDSGKLSGRIIDSDMHDVGRFLNRLLGLPPEIQNRLFELFVKVLDLLIHNARIE GNLDSGIIDMRASVIELKGTPKTVHVDQMSGASTVLFTFSMNRGVTWEAANAMLDGKQKDGIVCSNDGFYESKREWLGKRHFILAFESTASGLYKIVRPA VGESVREMSLSELRNKYRKLSSLDKACKDWEGEYEVSSAQCMHGPNCKIGSFCTVGRRVQEVYVLGGIVLPVWGTIEKALSKQGRQSHKRLRIVRLETTS DNNRIVGVLVPNGAVEAVLEDLAWVEEVDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	0	1
AT4G30870		ATMUS81	ARABIDOPSIS THALIANA MMS AND U...		Lus10039566 [exp]	2.0	0.8571
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10004503 [exp]	3.3	0.8691
AT2G37290			Ypt/Rab-GAP domain of gyp1p su...		Lus10014020 [exp]	4.6	0.8097
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10006269 [exp]	4.7	0.8242
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10004250 [exp]	5.3	0.8672
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10040488 [exp]	6.0	0.8432
AT4G32050			neurochondrin family protein (...		Lus10032403 [exp]	6.0	0.8306
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10042159 [exp]	7.5	0.8600
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Lus10020668 [exp]	7.8	0.7674
AT5G46070			Guanylate-binding family prote...		Lus10018638 [exp]	8.4	0.7918

Compare expression of checked genes

Lus10001836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.