Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79350 143 / 2e-39 EMB1135 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001760 [exp] 160 / 3e-45 AT1G79350 1480 / 0.0 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G174900 [exp] 152 / 1e-42 AT1G79350 1959 / 0.0 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G081200 [exp] 150 / 5e-42 AT1G79350 1971 / 0.0 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001837 pacid=23142379 polypeptide=Lus10001837 locus=Lus10001837.g ID=Lus10001837.BGIv1.0 annot-version=v1.0 ATGGCACAGCCATCGGCGCCACCGCCGCTGGCTCCTCCACCACCGCCTCCTTCTTCTCTTCCCGATGGCGTCCAGGTTCGCTGTGCTGGCTGCCGTATGA TCTTAACTGTAGCTCCTGGTGTCGTCGAGTTCGTTTGTCCAACCTGTCACATGCCTCAAATGCTTCCGCCGGAGCTCCTCTCCAGGGCCCACCCTCAACC TCACGGTCAAATGAGTACTCCCTCTCCTCCTCCTCAAGTACCTGCTCACGGCATTGATCCTTCCAAGATCCAGCTGCCTTGTGCTAATTGTAAGGCCCTT CTCAATGTCCCCCATGGCTTGGCTCGTTTCGTCTGCCCTCAGTGTGGTGTTGATCTCGCCGTAGACGTTTCCAAACTCAAGCACTTGCTTCGTCAGCCTA GGGCACCTCTTCCCTCACAGCTGCTTCCTCTAGCTCAGTTCACTCAATTGCGTCCTCCTCCTGCTGCCGTTCCTCCTCCTACGCTTCCTGAAGAAGTCAA CGAGGTTCTCCTTCTATTGCTTCATCTCTCTTTCTCTTTGTGTTTTGCGTTTTATGCTTGTTTGCTTGCTTGCTGCTTTGGCTCCTTGTCCGGAGAAGGA GCGTAG
AA sequence Show only first row Show all	>Lus10001837 pacid=23142379 polypeptide=Lus10001837 locus=Lus10001837.g ID=Lus10001837.BGIv1.0 annot-version=v1.0 MAQPSAPPPLAPPPPPPSSLPDGVQVRCAGCRMILTVAPGVVEFVCPTCHMPQMLPPELLSRAHPQPHGQMSTPSPPPQVPAHGIDPSKIQLPCANCKAL LNVPHGLARFVCPQCGVDLAVDVSKLKHLLRQPRAPLPSQLLPLAQFTQLRPPPAAVPPPTLPEEVNEVLLLLLHLSFSLCFAFYACLLACCFGSLSGEG A

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001837 [exp]	0	1
AT3G33530			Transducin family protein / WD...		Lus10019403 [exp]	6.2	0.8638
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10026261 [exp]	8.9	0.8715
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10011294 [exp]	9.8	0.8429
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Lus10023437 [exp]	13.9	0.8492
AT5G22780			Adaptor protein complex AP-2, ...		Lus10043363 [exp]	16.7	0.8388
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10035427 [exp]	20.5	0.8532
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10013433 [exp]	21.4	0.8598
AT1G58060			RNA helicase family protein (....		Lus10020816 [exp]	29.9	0.8563
AT3G08960			ARM repeat superfamily protein...		Lus10007842 [exp]	35.5	0.8061
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Lus10009218 [exp]	36.0	0.8247

Compare expression of checked genes

Lus10001837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.