Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79390 132 / 8e-41 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001759 [exp] 155 / 2e-49 AT1G79390 198 / 7e-67 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G081400 [exp] 139 / 3e-43 AT1G79390 200 / 9e-68 unknown protein Potri.010G174700 [exp] 89 / 2e-24 AT1G79390 91 / 1e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10001838 pacid=23142382 polypeptide=Lus10001838 locus=Lus10001838.g ID=Lus10001838.BGIv1.0 annot-version=v1.0 ATGGCGGTGGCTGGTGAGGAGGACGAGGGACTCCAGGTCCTTCTTCTTTACCTTTGCCACCGTCTGTGGCGTCGTCCCCGGCGTCATCGGCTAAAAAAAT TTTTAGGCTATTGTGTTATGCAAGCCACTAACTCCCGAAATCCGGAGCTGGAGCTCCGCCTTCGTCAGACCGCCCGCCCCGATTCTGTCATGATGGGTAA AGTCAATCAAGAGAGACTAGCTGAGTACCTTGGCGAACTGCAAAGGAAAGAGGATACTAATGACCGATATGTAGCTGCTCTAAAAGGAGAGACGTTGACC AGGAAACCTTATGTGAGAATTCAACCAATAACAGAGCAGACAAAAGCTGAGGCGAAACAGGAACAGCAGGGATCCAAAACTCAGAAGAAAAAGACTAGTT GA
AA sequence Show only first row Show all	>Lus10001838 pacid=23142382 polypeptide=Lus10001838 locus=Lus10001838.g ID=Lus10001838.BGIv1.0 annot-version=v1.0 MAVAGEEDEGLQVLLLYLCHRLWRRPRRHRLKKFLGYCVMQATNSRNPELELRLRQTARPDSVMMGKVNQERLAEYLGELQRKEDTNDRYVAALKGETLT RKPYVRIQPITEQTKAEAKQEQQGSKTQKKKTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79390			unknown protein		Lus10001838 [exp]	0	1
AT1G47820			unknown protein		Lus10035088 [exp]	2.0	0.8435
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Lus10023441 [exp]	5.8	0.7860
AT4G35980			unknown protein		Lus10041889 [exp]	6.8	0.8363
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10001201 [exp]	7.3	0.8340
AT3G58800			unknown protein		Lus10007354 [exp]	8.5	0.8263
AT5G54750			Transport protein particle (TR...		Lus10006060 [exp]	9.0	0.8090
AT2G33220			GRIM-19 protein (.1)		Lus10035237 [exp]	9.8	0.7972
AT3G62920			unknown protein		Lus10005942 [exp]	10.4	0.7710
AT1G11760		MED32	unknown protein		Lus10034758 [exp]	13.2	0.8153
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10017390 [exp]	14.3	0.8169

Compare expression of checked genes

Lus10001838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.