Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54350 601 / 0 ABCD2 ATP-binding cassette D2, ABC transporter family protein (.1) AT4G39850 120 / 6e-28 AtABCD1, ACN2, CTS, PED3, PXA1 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) AT1G27940 59 / 1e-08 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT3G28415 58 / 3e-08 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28345 52 / 2e-06 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT1G28010 49 / 1e-05 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT4G27420 47 / 5e-05 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT5G14100 44 / 0.0003 ABCI11, ATNAP14 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) AT2G07680 44 / 0.0004 ATMRP11, ABCC13 ATP-binding cassette C13, multidrug resistance-associated protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001758 [exp] 1017 / 0 AT1G54350 882 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Lus10041690 [exp] 118 / 4e-27 AT4G39850 1404 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10024056 [exp] 115 / 4e-26 AT4G39850 1666 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10041691 [exp] 75 / 8e-14 AT4G39850 613 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10008139 [exp] 57 / 4e-08 AT3G28860 1002 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10013178 [exp] 56 / 1e-07 AT3G28860 889 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10017271 [exp] 54 / 4e-07 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10043069 [exp] 53 / 1e-06 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10035453 [exp] 51 / 2e-06 AT1G67940 371 / 1e-130 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G176400 [exp] 685 / 0 AT1G54350 910 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Potri.007G092200 [exp] 120 / 9e-28 AT4G39850 2061 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Potri.005G076200 [exp] 117 / 5e-27 AT4G39850 2062 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Potri.002G019600 [exp] 54 / 3e-07 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.011G043100 [exp] 47 / 5e-05 AT1G30410 2090 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) Potri.008G012500 [exp] 44 / 0.0002 AT3G10670 446 / 2e-158 ATP-binding cassette I6, non-intrinsic ABC protein 7 (.1) Potri.004G034800 [exp] 45 / 0.0003 AT1G30410 2242 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) Potri.004G034700 [exp] 45 / 0.0003 AT1G30410 2216 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF05992 [flax] [poplar] SbmA_BacA SbmA/BacA-like family CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter CL0241 [flax] [poplar] ABC_membrane PF06472 [flax] [poplar] ABC_membrane_2 ABC transporter transmembrane region 2
Representative CDS sequence Show only first row Show all	>Lus10001839 pacid=23142385 polypeptide=Lus10001839 locus=Lus10001839.g ID=Lus10001839.BGIv1.0 annot-version=v1.0 ATGTCGTCGCTAGCACCGACGATGCAACTTATACCGGCGAAATCTCAACTTCTTTTATTATCATTAAGCGTCCCTCTCGACCACCTTACTCACACTTGTA AGCACCGCTCCTCGCTTCATCTCCACCGCTATATTAAACCGATGATGGCCATGCCCATCTCTACCACTAGCAAACGTCCCCGCCGCTGCCGCCGTAGTTC AACGTCTTGTTCCGCCGCTACACCTACTTCCTTTCCTTCTCAACCCCCACCGTCGCCACCACCAGATAGCGGAGACGGAAATGATGATGCTGGGAGGAGA GAAACGCCGGAGATTCGCACGCTTTTCCGGAGATTTTGGAAAGTGGCTGCTCCTTACTGGTTCTCAGAAGACAAGGACCAAGCACGACTGCAGCTCGCTG CCGTCTTTGCTCTCACTCTGGGTACCACTGGTATCAGCGTTGCTTTCAGTTTCCTCGGCCGGGACTTCTATAACGCCCTAGCTAACAAGGATCAAGAGCA GTTCACCAAGCAACTACTCTACTATTTAGGAGCCTTTGCTGGAGGAATCCCGATCTTTGTGCTGAGAGATTACGCTAGGGAGACTCTCGCTTTAAGGTGG AGGTCCTGGATGACGAAATATTACATAGACCGGTATCTAAAACACCAGATGTTTTACAAAATCCAGTCTCAATCTATCATTGATAATCCCGATCAGCGAA TCGTTGACGACCTGAGTTCTTTCACGGGGACAGCTCTGTCCTTCGCATTGACTCTATTCAATGCTGCTGTTGACTTGATATCGTTTAGCAACATCTTGTA TGGAATTTACCCTCCCCTGTTTGTTGTCCTCCTTCAATTGTTGATATCTTCAAGAAATCTGGAGTTCTTCACCAGTGGCTATAGATACCTGATTCAGATT CTTCCAGCTGCTCTCATTGCTCCTATGTTTTTCTCAGGGAAAATTGAATTTGGTGTCATTACCCAATCCGTATCAGCTTTTAACCATATCCTTGGGGACT TTTCTCTTATTGTATACCAGTTCCAGTCCATCAGTGCATTCTCAGCTATCATTGATCGATTAGGTGAATTTGACGACCTTTTGGATTCGAATAGCTCAAA CTCTCTCTCAGAGACCTTGGAAGAGATCACGGTGGAGTACTCTCCAACCAGAAGTTCGAATTCTCAGGAAGCGAATGGGTCTTTGTTGATGGACCAGTGT AAAAACTTACTCGTTGTGAAGGACCTGACTCTCCAAACTCCAAGAAGTAAAGCTACATTGATTAAGAATTTGTCATTAGTGGTGAACCAAGACGAACATT TGCTGGTCATGGGACCGAGTGGGAGTGGCAAAACTTCGCTGTTAAGAGCTCTGGCCGGTCTGTGGAATTATGGGAAAGGGGAAGTTATTTTCTGTGTTAG TGGTGGAGAAGATACTGAGCCGGGGATAACAGATGCCCAAGGAAGTCCTCGTATAAATGGAAACCAAAGGGACGTACTATTCCTTCCTCAAAAACCATAT ATGGTTCTGGGAACACTTCGACAGCAATTGCTTTATCCCACATGGGCAGATGGCGGCATTTCCGTGTCTGAGGATGCTAAATCAGCTGGTTCGGCAACCT TCTTGATGGAAAATCCAAAATCAGAAGAAGCTTATGGTAAGCCTAGCAAGCCAACGACAGAGGATTTGATACAGGTTTTGGACAGAGTTCGTCTGAGCTA CATATTGCCACGATTTGGTAGCCTAGATTCGACACATGAATGGTCTAGTGTTCTGTCCCTTGGTGAGCAGCAGCGGCTTGCGTTTGCACGATTGCTACTG TCAAAACCAAAGCTGGTTTTGTTGGACGAATCCACTAGTGCCTTAGATGAAAACAATGAGGGACATCTTTATGAGCAGATACGAGAGGCTGGTATAACAT ACATTAGCGTCGGCCACAGGCGAACTCTGCTGAAGCAACATAGAAAGGTGTTGAATATTACTGGTGCAGAAAATGCAAGCAGTCAGGAATGTGACTGGCA TGTTGAGACCATCAGTTCAGATCCGGTGGCCATGAGAGATGATTAA
AA sequence Show only first row Show all	>Lus10001839 pacid=23142385 polypeptide=Lus10001839 locus=Lus10001839.g ID=Lus10001839.BGIv1.0 annot-version=v1.0 MSSLAPTMQLIPAKSQLLLLSLSVPLDHLTHTCKHRSSLHLHRYIKPMMAMPISTTSKRPRRCRRSSTSCSAATPTSFPSQPPPSPPPDSGDGNDDAGRR ETPEIRTLFRRFWKVAAPYWFSEDKDQARLQLAAVFALTLGTTGISVAFSFLGRDFYNALANKDQEQFTKQLLYYLGAFAGGIPIFVLRDYARETLALRW RSWMTKYYIDRYLKHQMFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFALTLFNAAVDLISFSNILYGIYPPLFVVLLQLLISSRNLEFFTSGYRYLIQI LPAALIAPMFFSGKIEFGVITQSVSAFNHILGDFSLIVYQFQSISAFSAIIDRLGEFDDLLDSNSSNSLSETLEEITVEYSPTRSSNSQEANGSLLMDQC KNLLVVKDLTLQTPRSKATLIKNLSLVVNQDEHLLVMGPSGSGKTSLLRALAGLWNYGKGEVIFCVSGGEDTEPGITDAQGSPRINGNQRDVLFLPQKPY MVLGTLRQQLLYPTWADGGISVSEDAKSAGSATFLMENPKSEEAYGKPSKPTTEDLIQVLDRVRLSYILPRFGSLDSTHEWSSVLSLGEQQRLAFARLLL SKPKLVLLDESTSALDENNEGHLYEQIREAGITYISVGHRRTLLKQHRKVLNITGAENASSQECDWHVETISSDPVAMRDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001839 [exp]	0	1
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10001823 [exp]	1.4	0.9572
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10003876 [exp]	2.4	0.9353
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10022278 [exp]	2.6	0.9209
AT5G39980			Tetratricopeptide repeat (TPR)...		Lus10041429 [exp]	3.2	0.9183
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10004576 [exp]	3.7	0.9402
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001758 [exp]	4.7	0.9156
AT5G20140			SOUL heme-binding family prote...		Lus10013345 [exp]	4.9	0.9333
AT1G53250			unknown protein		Lus10028136 [exp]	4.9	0.9292
AT1G03160		FZL	FZO-like (.1.2)		Lus10014666 [exp]	7.4	0.9295
AT5G51010			Rubredoxin-like superfamily pr...		Lus10016735 [exp]	8.1	0.8878

Compare expression of checked genes

Lus10001839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.